rs10809838

Homo sapiens
T>G
LURAP1L-AS1 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T==0071 (2143/29988,GnomAD)
T==0067 (1960/29118,TOPMED)
T==0125 (625/5008,1000G)
T==0066 (254/3854,ALSPAC)
T==0070 (260/3708,TWINSUK)
chr9:12766338 (GRCh38.p7) (9p23)
AD
GWASdb2
1   publication(s)
See rs on genome
43 Enhancers around
11 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.12766338T>G
GRCh37.p13 chr 9NC_000009.11:g.12766337T>G

Gene: LURAP1L-AS1, LURAP1L antisense RNA 1(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LURAP1L-AS1 transcriptNR_125775.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.055G=0.945
1000GenomesAmericanSub694T=0.070G=0.930
1000GenomesEast AsianSub1008T=0.184G=0.816
1000GenomesEuropeSub1006T=0.078G=0.922
1000GenomesGlobalStudy-wide5008T=0.125G=0.875
1000GenomesSouth AsianSub978T=0.240G=0.760
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.066G=0.934
The Genome Aggregation DatabaseAfricanSub8736T=0.064G=0.936
The Genome Aggregation DatabaseAmericanSub838T=0.050G=0.950
The Genome Aggregation DatabaseEast AsianSub1616T=0.155G=0.845
The Genome Aggregation DatabaseEuropeSub18496T=0.068G=0.932
The Genome Aggregation DatabaseGlobalStudy-wide29988T=0.071G=0.928
The Genome Aggregation DatabaseOtherSub302T=0.120G=0.880
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.067G=0.932
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.070G=0.930
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs108098380.000878alcohol dependence21314694

eQTL of rs10809838 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10809838 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr91280983412809884E06743497
chr91281514512815287E06848808
chr91276041912760469E069-5868
chr91276056012760600E069-5737
chr91281387712815083E06947540
chr91271839512719209E070-47128
chr91281387712815083E07047540
chr91276041912760469E071-5868
chr91276056012760600E071-5737
chr91276063412760698E071-5639
chr91277972312779818E07113386
chr91277984712780030E07113510
chr91278408412786376E07117747
chr91280933112809463E07142994
chr91281387712815083E07147540
chr91281514512815287E07148808
chr91281387712815083E07347540
chr91277972312779818E07413386
chr91277984712780030E07413510
chr91278408412786376E07417747
chr91279722412797496E07430887
chr91279783712797929E07431500
chr91279794712798007E07431610
chr91279816412798332E07431827
chr91281387712815083E07447540
chr91271779612717846E081-48491
chr91271811012718176E081-48161
chr91271839512719209E081-47128
chr91271929812719448E081-46889
chr91271953112719815E081-46522
chr91271997712720061E081-46276
chr91272010312720159E081-46178
chr91279834412798730E08132007
chr91279880112798851E08132464
chr91279897512799029E08132638
chr91271727112717321E082-49016
chr91271737812717488E082-48849
chr91271929812719448E082-46889
chr91279707412797181E08230737
chr91279783712797929E08231500
chr91279794712798007E08231610
chr91279816412798332E08231827
chr91279834412798730E08232007









Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr91277478212777032E0678445
chr91277827912778866E06711942
chr91277478212777032E0688445
chr91277478212777032E0698445
chr91277478212777032E0708445
chr91277478212777032E0718445
chr91277478212777032E0728445
chr91277478212777032E0738445
chr91277478212777032E0748445
chr91277478212777032E0818445
chr91277478212777032E0828445