rs10820857

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0172 (5146/29898,GnomAD)
A=0192 (5599/29118,TOPMED)
A=0227 (1139/5008,1000G)
A=0113 (435/3854,ALSPAC)
A=0109 (406/3708,TWINSUK)
chr9:91460639 (GRCh38.p7) (9q22.31)
AD
GWASdb2
1   publication(s)
See rs on genome
29 Enhancers around
10 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.91460639G>A
GRCh37.p13 chr 9NC_000009.11:g.94222921G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.720A=0.280
1000GenomesAmericanSub694G=0.900A=0.100
1000GenomesEast AsianSub1008G=0.623A=0.377
1000GenomesEuropeSub1006G=0.896A=0.104
1000GenomesGlobalStudy-wide5008G=0.773A=0.227
1000GenomesSouth AsianSub978G=0.780A=0.220
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.887A=0.113
The Genome Aggregation DatabaseAfricanSub8688G=0.740A=0.260
The Genome Aggregation DatabaseAmericanSub838G=0.880A=0.120
The Genome Aggregation DatabaseEast AsianSub1606G=0.583A=0.417
The Genome Aggregation DatabaseEuropeSub18464G=0.887A=0.112
The Genome Aggregation DatabaseGlobalStudy-wide29898G=0.827A=0.172
The Genome Aggregation DatabaseOtherSub302G=0.840A=0.160
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.807A=0.192
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.891A=0.109
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs108208570.000129alcohol dependence20201924

eQTL of rs10820857 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10820857 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr99424614994246455E06723228
chr99425117994251239E06728258
chr99425153694252118E06728615
chr99418138094182520E068-40401
chr99424509994246112E06922178
chr99424614994246455E06923228
chr99425117994251239E06928258
chr99425153694252118E06928615
chr99425214194252370E06929220
chr99423932594239480E07116404
chr99423951394239854E07116592
chr99425117994251239E07128258
chr99425153694252118E07128615
chr99425214194252370E07129220
chr99424509994246112E07222178
chr99424614994246455E07223228
chr99425153694252118E07228615
chr99425214194252370E07229220
chr99424509994246112E07322178
chr99423932594239480E07416404
chr99423951394239854E07416592
chr99425153694252118E07428615
chr99425214194252370E07429220
chr99418138094182520E081-40401
chr99419119394191687E081-31234
chr99419189994192117E081-30804
chr99419217894192218E081-30703
chr99418138094182520E082-40401
chr99419119394191687E082-31234









Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr99418255894187945E067-34976
chr99418255894187945E068-34976
chr99418255894187945E069-34976
chr99418255894187945E070-34976
chr99418255894187945E071-34976
chr99418255894187945E072-34976
chr99418255894187945E073-34976
chr99418255894187945E074-34976
chr99418255894187945E081-34976
chr99418255894187945E082-34976