| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 9 | NC_000009.12:g.92339447G>C |
| GRCh37.p13 chr 9 | NC_000009.11:g.95101729G>C |
| Molecule type | Change | Amino acid[Codon] | SO Term |
|---|---|---|---|
| CENPP transcript variant 1 | NM_001012267.2:c. | N/A | Intron Variant |
| CENPP transcript variant 2 | NM_001286969.1:c. | N/A | Intron Variant |
| CENPP transcript variant 3 | NM_001286971.1:c. | N/A | Genic Upstream Transcript Variant |
| CENPP transcript variant X2 | XM_011518685.2:c. | N/A | Intron Variant |
| CENPP transcript variant X4 | XM_011518689.1:c. | N/A | Intron Variant |
| CENPP transcript variant X1 | XM_017014715.1:c. | N/A | Intron Variant |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | G=0.268 | C=0.732 |
| 1000Genomes | American | Sub | 694 | G=0.760 | C=0.240 |
| 1000Genomes | East Asian | Sub | 1008 | G=0.900 | C=0.100 |
| 1000Genomes | Europe | Sub | 1006 | G=0.675 | C=0.325 |
| 1000Genomes | Global | Study-wide | 5008 | G=0.651 | C=0.349 |
| 1000Genomes | South Asian | Sub | 978 | G=0.810 | C=0.190 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.687 | C=0.313 |
| The Genome Aggregation Database | African | Sub | 8706 | G=0.353 | C=0.647 |
| The Genome Aggregation Database | American | Sub | 838 | G=0.760 | C=0.240 |
| The Genome Aggregation Database | East Asian | Sub | 1620 | G=0.903 | C=0.097 |
| The Genome Aggregation Database | Europe | Sub | 18470 | G=0.700 | C=0.299 |
| The Genome Aggregation Database | Global | Study-wide | 29934 | G=0.611 | C=0.388 |
| The Genome Aggregation Database | Other | Sub | 300 | G=0.610 | C=0.390 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.526 | C=0.473 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.667 | C=0.333 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs10820967 | 0.000923 | alcohol dependence | 21314694 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue |
|---|---|---|---|---|---|---|
| Chr9:95101729 | CENPP | ENSG00000188312.9 | G>C | 1.5165e-20 | 13810 | Cerebellum |
| Chr9:95101729 | IPPK | ENSG00000127080.5 | G>C | 6.5253e-7 | -330818 | Cerebellum |
| Chr9:95101729 | CENPP | ENSG00000188312.9 | G>C | 1.5704e-16 | 13810 | Frontal_Cortex_BA9 |
| Chr9:95101729 | CENPP | ENSG00000188312.9 | G>C | 7.6963e-9 | 13810 | Hypothalamus |
| Chr9:95101729 | CENPP | ENSG00000188312.9 | G>C | 5.0201e-18 | 13810 | Cortex |
| Chr9:95101729 | IPPK | ENSG00000127080.5 | G>C | 1.4337e-6 | -330818 | Cerebellar_Hemisphere |
| Chr9:95101729 | CENPP | ENSG00000188312.9 | G>C | 2.8739e-16 | 13810 | Caudate_basal_ganglia |
| Chr9:95101729 | CENPP | ENSG00000188312.9 | G>C | 1.3039e-18 | 13810 | Nucleus_accumbens_basal_ganglia |
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr9 | 95063329 | 95063369 | E067 | -38360 |
| chr9 | 95063395 | 95063486 | E067 | -38243 |
| chr9 | 95054099 | 95054176 | E068 | -47553 |
| chr9 | 95054534 | 95054599 | E068 | -47130 |
| chr9 | 95086376 | 95086426 | E068 | -15303 |
| chr9 | 95086494 | 95086566 | E068 | -15163 |
| chr9 | 95054099 | 95054176 | E069 | -47553 |
| chr9 | 95054534 | 95054599 | E069 | -47130 |
| chr9 | 95086376 | 95086426 | E069 | -15303 |
| chr9 | 95086494 | 95086566 | E069 | -15163 |
| chr9 | 95054099 | 95054176 | E070 | -47553 |
| chr9 | 95054534 | 95054599 | E070 | -47130 |
| chr9 | 95086376 | 95086426 | E070 | -15303 |
| chr9 | 95086494 | 95086566 | E070 | -15163 |
| chr9 | 95089301 | 95089389 | E070 | -12340 |
| chr9 | 95054099 | 95054176 | E071 | -47553 |
| chr9 | 95054534 | 95054599 | E071 | -47130 |
| chr9 | 95086376 | 95086426 | E071 | -15303 |
| chr9 | 95086494 | 95086566 | E071 | -15163 |
| chr9 | 95054099 | 95054176 | E072 | -47553 |
| chr9 | 95054534 | 95054599 | E072 | -47130 |
| chr9 | 95086376 | 95086426 | E073 | -15303 |
| chr9 | 95086494 | 95086566 | E073 | -15163 |
| chr9 | 95089301 | 95089389 | E073 | -12340 |
| chr9 | 95086376 | 95086426 | E074 | -15303 |
| chr9 | 95086494 | 95086566 | E074 | -15163 |
| chr9 | 95054534 | 95054599 | E081 | -47130 |
| chr9 | 95054099 | 95054176 | E082 | -47553 |
| chr9 | 95054534 | 95054599 | E082 | -47130 |
| chr9 | 95086376 | 95086426 | E082 | -15303 |
| chr9 | 95086494 | 95086566 | E082 | -15163 |
| Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
|---|---|---|---|---|
| chr9 | 95055165 | 95057412 | E067 | -44317 |
| chr9 | 95086801 | 95088782 | E067 | -12947 |
| chr9 | 95055165 | 95057412 | E068 | -44317 |
| chr9 | 95086801 | 95088782 | E068 | -12947 |
| chr9 | 95055165 | 95057412 | E069 | -44317 |
| chr9 | 95086801 | 95088782 | E069 | -12947 |
| chr9 | 95055165 | 95057412 | E070 | -44317 |
| chr9 | 95086801 | 95088782 | E070 | -12947 |
| chr9 | 95055165 | 95057412 | E071 | -44317 |
| chr9 | 95086801 | 95088782 | E071 | -12947 |
| chr9 | 95055165 | 95057412 | E072 | -44317 |
| chr9 | 95086801 | 95088782 | E072 | -12947 |
| chr9 | 95055165 | 95057412 | E073 | -44317 |
| chr9 | 95086801 | 95088782 | E073 | -12947 |
| chr9 | 95055165 | 95057412 | E074 | -44317 |
| chr9 | 95086801 | 95088782 | E074 | -12947 |
| chr9 | 95055165 | 95057412 | E081 | -44317 |
| chr9 | 95055165 | 95057412 | E082 | -44317 |
| chr9 | 95086801 | 95088782 | E082 | -12947 |