SNP Detail Info-rs10839942

Organism: Homo sapiens

Alleles: C>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0352 (10497/29756,GnomAD)
A=0348 (10139/29118,TOPMED)
A=0339 (1700/5008,1000G)
A=0395 (1523/3854,ALSPAC)
A=0394 (1461/3708,TWINSUK)

Position: chr11:7932003 (GRCh38.p7) (11p15.4)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 2 Enhancers around

Promoter: 2 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 11	NC_000011.10:g.7932003C>A
GRCh37.p13 chr 11	NC_000011.9:g.7953550C>A
GRCh38.p7 chr 11 novel patch HSCHR11_1_CTG1_2	NW_011332695.1:g.162997C>A
GRCh38.p7 chr 11 alt locus HSCHR11_1_CTG5	NT_187583.1:g.163504C>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.717	A=0.283
1000Genomes	American	Sub	694	C=0.540	A=0.460
1000Genomes	East Asian	Sub	1008	C=0.730	A=0.270
1000Genomes	Europe	Sub	1006	C=0.629	A=0.371
1000Genomes	Global	Study-wide	5008	C=0.661	A=0.339
1000Genomes	South Asian	Sub	978	C=0.630	A=0.370
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.605	A=0.395
The Genome Aggregation Database	African	Sub	8664	C=0.698	A=0.302
The Genome Aggregation Database	American	Sub	832	C=0.560	A=0.440
The Genome Aggregation Database	East Asian	Sub	1604	C=0.708	A=0.292
The Genome Aggregation Database	Europe	Sub	18354	C=0.619	A=0.380
The Genome Aggregation Database	Global	Study-wide	29756	C=0.647	A=0.352
The Genome Aggregation Database	Other	Sub	302	C=0.770	A=0.230
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.651	A=0.348
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.606	A=0.394

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr11	7985868	7986265	E070	32318
chr11	7985868	7986265	E082	32318

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr11	7949248	7949467	E074	-4083
chr11	7949476	7949625	E074	-3925

rs10839942