rs10839942

Homo sapiens
C>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0352 (10497/29756,GnomAD)
A=0348 (10139/29118,TOPMED)
A=0339 (1700/5008,1000G)
A=0395 (1523/3854,ALSPAC)
A=0394 (1461/3708,TWINSUK)
chr11:7932003 (GRCh38.p7) (11p15.4)
AD
GWASdb2
1   publication(s)
See rs on genome
2 Enhancers around
2 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.7932003C>A
GRCh37.p13 chr 11NC_000011.9:g.7953550C>A
GRCh38.p7 chr 11 novel patch HSCHR11_1_CTG1_2NW_011332695.1:g.162997C>A
GRCh38.p7 chr 11 alt locus HSCHR11_1_CTG5NT_187583.1:g.163504C>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.717A=0.283
1000GenomesAmericanSub694C=0.540A=0.460
1000GenomesEast AsianSub1008C=0.730A=0.270
1000GenomesEuropeSub1006C=0.629A=0.371
1000GenomesGlobalStudy-wide5008C=0.661A=0.339
1000GenomesSouth AsianSub978C=0.630A=0.370
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.605A=0.395
The Genome Aggregation DatabaseAfricanSub8664C=0.698A=0.302
The Genome Aggregation DatabaseAmericanSub832C=0.560A=0.440
The Genome Aggregation DatabaseEast AsianSub1604C=0.708A=0.292
The Genome Aggregation DatabaseEuropeSub18354C=0.619A=0.380
The Genome Aggregation DatabaseGlobalStudy-wide29756C=0.647A=0.352
The Genome Aggregation DatabaseOtherSub302C=0.770A=0.230
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.651A=0.348
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.606A=0.394
PMID Title Author Journal
23953852Genome-wide association studies of maximum number of drinks.Pan YJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs108399424.54E-05alcohol consumption23953852

eQTL of rs10839942 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10839942 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr1179858687986265E07032318
chr1179858687986265E08232318


Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr1179492487949467E074-4083
chr1179494767949625E074-3925