SNP Detail Info-rs10839947

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0377 (11297/29918,GnomAD)
A=0343 (9993/29118,TOPMED)
A=0399 (1996/5008,1000G)
A=0379 (1459/3854,ALSPAC)
A=0375 (1390/3708,TWINSUK)

Position: chr11:7936406 (GRCh38.p7) (11p15.4)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 15 Enhancers around

Promoter: 2 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 11	NC_000011.10:g.7936406G>A
GRCh37.p13 chr 11	NC_000011.9:g.7957953G>A
GRCh38.p7 chr 11 novel patch HSCHR11_1_CTG1_2	NW_011332695.1:g.167400G>A
GRCh38.p7 chr 11 alt locus HSCHR11_1_CTG5	NT_187583.1:g.167907G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.708	A=0.292
1000Genomes	American	Sub	694	G=0.630	A=0.370
1000Genomes	East Asian	Sub	1008	G=0.502	A=0.498
1000Genomes	Europe	Sub	1006	G=0.586	A=0.414
1000Genomes	Global	Study-wide	5008	G=0.601	A=0.399
1000Genomes	South Asian	Sub	978	G=0.560	A=0.440
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.621	A=0.379
The Genome Aggregation Database	African	Sub	8718	G=0.698	A=0.302
The Genome Aggregation Database	American	Sub	836	G=0.630	A=0.370
The Genome Aggregation Database	East Asian	Sub	1612	G=0.491	A=0.509
The Genome Aggregation Database	Europe	Sub	18450	G=0.600	A=0.400
The Genome Aggregation Database	Global	Study-wide	29918	G=0.622	A=0.377
The Genome Aggregation Database	Other	Sub	302	G=0.500	A=0.500
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.656	A=0.343
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.625	A=0.375

PMID	Title	Author	Journal
23953852	Genome-wide association studies of maximum number of drinks.	Pan Y	J Psychiatr Res

SNP ID	p-value	Traits	Study
rs10839947	8.37E-05	alcohol consumption	23953852

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr11	8007611	8007848	E067	49658
chr11	8007611	8007848	E068	49658
chr11	8007611	8007848	E069	49658
chr11	7985868	7986265	E070	27915
chr11	8007611	8007848	E070	49658
chr11	8007242	8007477	E072	49289
chr11	8007526	8007574	E072	49573
chr11	8007611	8007848	E072	49658
chr11	8007611	8007848	E073	49658
chr11	8007611	8007848	E074	49658
chr11	7985868	7986265	E082	27915
chr11	8006993	8007037	E082	49040
chr11	8007242	8007477	E082	49289
chr11	8007526	8007574	E082	49573
chr11	8007611	8007848	E082	49658

rs10839947