SNP Detail Info-rs10840729

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0477 (14244/29812,GnomAD)
G==0477 (13910/29118,TOPMED)
G==0446 (2232/5008,1000G)
G==0492 (1895/3854,ALSPAC)
G==0487 (1806/3708,TWINSUK)

Position: chr12:17500900 (GRCh38.p7) (12p12.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 12	NC_000012.12:g.17500900G>A
GRCh37.p13 chr 12	NC_000012.11:g.17653834G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.495	A=0.505
1000Genomes	American	Sub	694	G=0.390	A=0.610
1000Genomes	East Asian	Sub	1008	G=0.424	A=0.576
1000Genomes	Europe	Sub	1006	G=0.508	A=0.492
1000Genomes	Global	Study-wide	5008	G=0.446	A=0.554
1000Genomes	South Asian	Sub	978	G=0.380	A=0.620
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.492	A=0.508
The Genome Aggregation Database	African	Sub	8702	G=0.474	A=0.526
The Genome Aggregation Database	American	Sub	832	G=0.370	A=0.630
The Genome Aggregation Database	East Asian	Sub	1582	G=0.363	A=0.637
The Genome Aggregation Database	Europe	Sub	18398	G=0.495	A=0.504
The Genome Aggregation Database	Global	Study-wide	29812	G=0.477	A=0.522
The Genome Aggregation Database	Other	Sub	298	G=0.420	A=0.580
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.477	A=0.522
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.487	A=0.513

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs10840729	0.00084	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs10840729