Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 12 | NC_000012.12:g.124176393A>C |
GRCh37.p13 chr 12 | NC_000012.11:g.124660939A>C |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
ZNF664-FAM101A transcript | NM_001204299.1:c. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | A=0.728 | C=0.272 |
1000Genomes | American | Sub | 694 | A=0.700 | C=0.300 |
1000Genomes | East Asian | Sub | 1008 | A=0.544 | C=0.456 |
1000Genomes | Europe | Sub | 1006 | A=0.716 | C=0.284 |
1000Genomes | Global | Study-wide | 5008 | A=0.691 | C=0.309 |
1000Genomes | South Asian | Sub | 978 | A=0.760 | C=0.240 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.706 | C=0.294 |
The Genome Aggregation Database | African | Sub | 8704 | A=0.775 | C=0.225 |
The Genome Aggregation Database | American | Sub | 836 | A=0.640 | C=0.360 |
The Genome Aggregation Database | East Asian | Sub | 1614 | A=0.499 | C=0.501 |
The Genome Aggregation Database | Europe | Sub | 18470 | A=0.716 | C=0.283 |
The Genome Aggregation Database | Global | Study-wide | 29926 | A=0.720 | C=0.279 |
The Genome Aggregation Database | Other | Sub | 302 | A=0.790 | C=0.210 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.747 | C=0.252 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.715 | C=0.285 |
PMID | Title | Author | Journal |
---|---|---|---|
24277619 | ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample. | Quillen EE | Am J Med Genet B Neuropsychiatr Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs10846616 | 0.000658 | alcohol consumption (maxi-drinks) | 24277619 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr12 | 124637056 | 124637326 | E067 | -23613 |
chr12 | 124637365 | 124637601 | E067 | -23338 |
chr12 | 124672539 | 124673076 | E067 | 11600 |
chr12 | 124673091 | 124673593 | E067 | 12152 |
chr12 | 124673964 | 124674025 | E067 | 13025 |
chr12 | 124674048 | 124674152 | E067 | 13109 |
chr12 | 124673091 | 124673593 | E068 | 12152 |
chr12 | 124673608 | 124673706 | E068 | 12669 |
chr12 | 124673765 | 124673840 | E068 | 12826 |
chr12 | 124674753 | 124674803 | E068 | 13814 |
chr12 | 124702877 | 124702956 | E068 | 41938 |
chr12 | 124703315 | 124703642 | E068 | 42376 |
chr12 | 124634457 | 124634686 | E069 | -26253 |
chr12 | 124634787 | 124635020 | E069 | -25919 |
chr12 | 124644217 | 124645197 | E069 | -15742 |
chr12 | 124660110 | 124660160 | E069 | -779 |
chr12 | 124673765 | 124673840 | E069 | 12826 |
chr12 | 124673964 | 124674025 | E069 | 13025 |
chr12 | 124674048 | 124674152 | E069 | 13109 |
chr12 | 124674181 | 124674237 | E069 | 13242 |
chr12 | 124674298 | 124674428 | E069 | 13359 |
chr12 | 124674753 | 124674803 | E069 | 13814 |
chr12 | 124674885 | 124675269 | E069 | 13946 |
chr12 | 124644217 | 124645197 | E070 | -15742 |
chr12 | 124645550 | 124645787 | E070 | -15152 |
chr12 | 124658607 | 124660053 | E070 | -886 |
chr12 | 124660110 | 124660160 | E070 | -779 |
chr12 | 124660178 | 124660918 | E070 | -21 |
chr12 | 124675525 | 124675576 | E070 | 14586 |
chr12 | 124675588 | 124675823 | E070 | 14649 |
chr12 | 124675914 | 124676002 | E070 | 14975 |
chr12 | 124701855 | 124701922 | E070 | 40916 |
chr12 | 124701993 | 124702692 | E070 | 41054 |
chr12 | 124634457 | 124634686 | E071 | -26253 |
chr12 | 124634787 | 124635020 | E071 | -25919 |
chr12 | 124644217 | 124645197 | E071 | -15742 |
chr12 | 124672539 | 124673076 | E071 | 11600 |
chr12 | 124673091 | 124673593 | E071 | 12152 |
chr12 | 124701855 | 124701922 | E071 | 40916 |
chr12 | 124634323 | 124634373 | E072 | -26566 |
chr12 | 124634457 | 124634686 | E072 | -26253 |
chr12 | 124634787 | 124635020 | E072 | -25919 |
chr12 | 124672539 | 124673076 | E072 | 11600 |
chr12 | 124673091 | 124673593 | E072 | 12152 |
chr12 | 124673608 | 124673706 | E072 | 12669 |
chr12 | 124673765 | 124673840 | E072 | 12826 |
chr12 | 124660110 | 124660160 | E073 | -779 |
chr12 | 124672539 | 124673076 | E073 | 11600 |
chr12 | 124673091 | 124673593 | E073 | 12152 |
chr12 | 124673608 | 124673706 | E073 | 12669 |
chr12 | 124673765 | 124673840 | E073 | 12826 |
chr12 | 124673964 | 124674025 | E073 | 13025 |
chr12 | 124637056 | 124637326 | E074 | -23613 |
chr12 | 124637365 | 124637601 | E074 | -23338 |
chr12 | 124678925 | 124680191 | E074 | 17986 |
chr12 | 124631690 | 124631857 | E081 | -29082 |
chr12 | 124631894 | 124632556 | E081 | -28383 |
chr12 | 124634787 | 124635020 | E081 | -25919 |
chr12 | 124635188 | 124635238 | E081 | -25701 |
chr12 | 124636643 | 124636760 | E081 | -24179 |
chr12 | 124636807 | 124636881 | E081 | -24058 |
chr12 | 124636948 | 124637010 | E081 | -23929 |
chr12 | 124637056 | 124637326 | E081 | -23613 |
chr12 | 124637365 | 124637601 | E081 | -23338 |
chr12 | 124644217 | 124645197 | E081 | -15742 |
chr12 | 124652417 | 124652480 | E081 | -8459 |
chr12 | 124652508 | 124652552 | E081 | -8387 |
chr12 | 124652689 | 124652918 | E081 | -8021 |
chr12 | 124652922 | 124653240 | E081 | -7699 |
chr12 | 124658124 | 124658225 | E081 | -2714 |
chr12 | 124658263 | 124658400 | E081 | -2539 |
chr12 | 124658607 | 124660053 | E081 | -886 |
chr12 | 124660110 | 124660160 | E081 | -779 |
chr12 | 124660178 | 124660918 | E081 | -21 |
chr12 | 124661120 | 124661170 | E081 | 181 |
chr12 | 124661224 | 124661345 | E081 | 285 |
chr12 | 124661394 | 124661444 | E081 | 455 |
chr12 | 124661659 | 124661784 | E081 | 720 |
chr12 | 124666818 | 124667014 | E081 | 5879 |
chr12 | 124667018 | 124667175 | E081 | 6079 |
chr12 | 124669042 | 124669221 | E081 | 8103 |
chr12 | 124669337 | 124669443 | E081 | 8398 |
chr12 | 124669709 | 124669821 | E081 | 8770 |
chr12 | 124669851 | 124669911 | E081 | 8912 |
chr12 | 124669942 | 124670022 | E081 | 9003 |
chr12 | 124670434 | 124670569 | E081 | 9495 |
chr12 | 124670584 | 124671507 | E081 | 9645 |
chr12 | 124671548 | 124671603 | E081 | 10609 |
chr12 | 124671941 | 124672129 | E081 | 11002 |
chr12 | 124672185 | 124672235 | E081 | 11246 |
chr12 | 124672258 | 124672434 | E081 | 11319 |
chr12 | 124672539 | 124673076 | E081 | 11600 |
chr12 | 124673091 | 124673593 | E081 | 12152 |
chr12 | 124673608 | 124673706 | E081 | 12669 |
chr12 | 124673765 | 124673840 | E081 | 12826 |
chr12 | 124673964 | 124674025 | E081 | 13025 |
chr12 | 124674048 | 124674152 | E081 | 13109 |
chr12 | 124674181 | 124674237 | E081 | 13242 |
chr12 | 124674298 | 124674428 | E081 | 13359 |
chr12 | 124674753 | 124674803 | E081 | 13814 |
chr12 | 124674885 | 124675269 | E081 | 13946 |
chr12 | 124675305 | 124675493 | E081 | 14366 |
chr12 | 124675525 | 124675576 | E081 | 14586 |
chr12 | 124678925 | 124680191 | E081 | 17986 |
chr12 | 124701993 | 124702692 | E081 | 41054 |
chr12 | 124631690 | 124631857 | E082 | -29082 |
chr12 | 124641801 | 124641858 | E082 | -19081 |
chr12 | 124641869 | 124642425 | E082 | -18514 |
chr12 | 124652689 | 124652918 | E082 | -8021 |
chr12 | 124652922 | 124653240 | E082 | -7699 |
chr12 | 124658607 | 124660053 | E082 | -886 |
chr12 | 124660110 | 124660160 | E082 | -779 |
chr12 | 124660178 | 124660918 | E082 | -21 |
chr12 | 124661120 | 124661170 | E082 | 181 |
chr12 | 124661224 | 124661345 | E082 | 285 |
chr12 | 124661394 | 124661444 | E082 | 455 |
chr12 | 124672258 | 124672434 | E082 | 11319 |
chr12 | 124672539 | 124673076 | E082 | 11600 |
chr12 | 124673091 | 124673593 | E082 | 12152 |
chr12 | 124673608 | 124673706 | E082 | 12669 |
chr12 | 124673765 | 124673840 | E082 | 12826 |
chr12 | 124673964 | 124674025 | E082 | 13025 |
chr12 | 124674048 | 124674152 | E082 | 13109 |
chr12 | 124674181 | 124674237 | E082 | 13242 |
chr12 | 124674298 | 124674428 | E082 | 13359 |
chr12 | 124674753 | 124674803 | E082 | 13814 |
chr12 | 124676843 | 124676893 | E082 | 15904 |
chr12 | 124701855 | 124701922 | E082 | 40916 |
chr12 | 124702877 | 124702956 | E082 | 41938 |