| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 12 | NC_000012.12:g.3921938C>T |
| GRCh37.p13 chr 12 | NC_000012.11:g.4031104C>T |
| Molecule type | Change | Amino acid[Codon] | SO Term |
|---|---|---|---|
| LOC105369608 transcript variant X1 | XR_931557.2:n.162...XR_931557.2:n.1627G>A | G>A | Non Coding Transcript Variant |
| LOC105369608 transcript variant X2 | XR_001748965.1:n. | N/A | Genic Downstream Transcript Variant |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | C=0.973 | T=0.027 |
| 1000Genomes | American | Sub | 694 | C=0.920 | T=0.080 |
| 1000Genomes | East Asian | Sub | 1008 | C=0.990 | T=0.010 |
| 1000Genomes | Europe | Sub | 1006 | C=0.813 | T=0.187 |
| 1000Genomes | Global | Study-wide | 5008 | C=0.917 | T=0.083 |
| 1000Genomes | South Asian | Sub | 978 | C=0.870 | T=0.130 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.809 | T=0.191 |
| The Genome Aggregation Database | African | Sub | 8722 | C=0.953 | T=0.047 |
| The Genome Aggregation Database | American | Sub | 834 | C=0.910 | T=0.090 |
| The Genome Aggregation Database | East Asian | Sub | 1618 | C=0.994 | T=0.006 |
| The Genome Aggregation Database | Europe | Sub | 18470 | C=0.794 | T=0.205 |
| The Genome Aggregation Database | Global | Study-wide | 29946 | C=0.855 | T=0.144 |
| The Genome Aggregation Database | Other | Sub | 302 | C=0.820 | T=0.180 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.887 | T=0.112 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.797 | T=0.203 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs10848958 | 0.000381 | alcohol dependence | 21314694 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr12 | 4039087 | 4039254 | E068 | 7983 |
| chr12 | 4039385 | 4039753 | E068 | 8281 |
| chr12 | 4039769 | 4039934 | E068 | 8665 |
| chr12 | 4039974 | 4040035 | E068 | 8870 |
| chr12 | 4040063 | 4040237 | E068 | 8959 |
| chr12 | 3988373 | 3988423 | E070 | -42681 |
| chr12 | 3988480 | 3988750 | E070 | -42354 |
| chr12 | 3989047 | 3989385 | E070 | -41719 |
| chr12 | 3992303 | 3992671 | E070 | -38433 |
| chr12 | 3992705 | 3992776 | E070 | -38328 |
| chr12 | 3992785 | 3992848 | E070 | -38256 |
| chr12 | 3992888 | 3992945 | E070 | -38159 |
| chr12 | 3993491 | 3993549 | E070 | -37555 |
| chr12 | 3993748 | 3993798 | E070 | -37306 |
| chr12 | 3993810 | 3993912 | E070 | -37192 |
| chr12 | 3995331 | 3995402 | E070 | -35702 |
| chr12 | 3995432 | 3995500 | E070 | -35604 |
| chr12 | 3995520 | 3995721 | E070 | -35383 |
| chr12 | 3995831 | 3995906 | E070 | -35198 |
| chr12 | 3996030 | 3996070 | E070 | -35034 |
| chr12 | 3996578 | 3996628 | E070 | -34476 |
| chr12 | 3996860 | 3996910 | E070 | -34194 |
| chr12 | 3996938 | 3997370 | E070 | -33734 |
| chr12 | 3997478 | 3997624 | E070 | -33480 |
| chr12 | 3997940 | 3998104 | E070 | -33000 |
| chr12 | 4000029 | 4000258 | E070 | -30846 |
| chr12 | 4000266 | 4000369 | E070 | -30735 |
| chr12 | 4000503 | 4000684 | E070 | -30420 |
| chr12 | 4000929 | 4000979 | E070 | -30125 |
| chr12 | 4001021 | 4001214 | E070 | -29890 |
| chr12 | 4001330 | 4001383 | E070 | -29721 |
| chr12 | 4001704 | 4001831 | E070 | -29273 |
| chr12 | 4001874 | 4002006 | E070 | -29098 |
| chr12 | 4005546 | 4005804 | E070 | -25300 |
| chr12 | 4005873 | 4006902 | E070 | -24202 |
| chr12 | 4006915 | 4007146 | E070 | -23958 |
| chr12 | 4009161 | 4009215 | E070 | -21889 |
| chr12 | 4013977 | 4014017 | E070 | -17087 |
| chr12 | 4014117 | 4014173 | E070 | -16931 |
| chr12 | 4027667 | 4027721 | E070 | -3383 |
| chr12 | 4027771 | 4027851 | E070 | -3253 |
| chr12 | 4027890 | 4027944 | E070 | -3160 |
| chr12 | 4028189 | 4028239 | E070 | -2865 |
| chr12 | 4028556 | 4028606 | E070 | -2498 |
| chr12 | 4029017 | 4029108 | E070 | -1996 |
| chr12 | 4031029 | 4031125 | E070 | 0 |
| chr12 | 4031145 | 4031254 | E070 | 41 |
| chr12 | 4032011 | 4032067 | E070 | 907 |
| chr12 | 4032177 | 4032446 | E070 | 1073 |
| chr12 | 4032454 | 4032527 | E070 | 1350 |
| chr12 | 4032629 | 4032737 | E070 | 1525 |
| chr12 | 4032957 | 4032997 | E070 | 1853 |
| chr12 | 4033028 | 4033068 | E070 | 1924 |
| chr12 | 4033168 | 4033256 | E070 | 2064 |
| chr12 | 4033257 | 4033325 | E070 | 2153 |
| chr12 | 4033428 | 4033604 | E070 | 2324 |
| chr12 | 4033868 | 4033929 | E070 | 2764 |
| chr12 | 4033991 | 4034041 | E070 | 2887 |
| chr12 | 4040890 | 4041413 | E070 | 9786 |
| chr12 | 4041433 | 4041717 | E070 | 10329 |
| chr12 | 4042111 | 4042211 | E070 | 11007 |
| chr12 | 4042242 | 4042437 | E070 | 11138 |
| chr12 | 4042450 | 4042553 | E070 | 11346 |
| chr12 | 4042654 | 4043035 | E070 | 11550 |
| chr12 | 4074404 | 4074864 | E070 | 43300 |
| chr12 | 4074935 | 4075031 | E070 | 43831 |
| chr12 | 4075131 | 4075295 | E070 | 44027 |
| chr12 | 4075325 | 4075375 | E070 | 44221 |
| chr12 | 4075552 | 4075625 | E070 | 44448 |
| chr12 | 4075692 | 4075950 | E070 | 44588 |
| chr12 | 4005546 | 4005804 | E071 | -25300 |
| chr12 | 4005873 | 4006902 | E071 | -24202 |
| chr12 | 4006915 | 4007146 | E071 | -23958 |
| chr12 | 3994309 | 3995202 | E074 | -35902 |
| chr12 | 4029441 | 4030624 | E074 | -480 |
| chr12 | 3990236 | 3990324 | E081 | -40780 |
| chr12 | 3990361 | 3991085 | E081 | -40019 |
| chr12 | 3991126 | 3992239 | E081 | -38865 |
| chr12 | 3992303 | 3992671 | E081 | -38433 |
| chr12 | 3992705 | 3992776 | E081 | -38328 |
| chr12 | 3993491 | 3993549 | E081 | -37555 |
| chr12 | 3993748 | 3993798 | E081 | -37306 |
| chr12 | 3993810 | 3993912 | E081 | -37192 |
| chr12 | 3994309 | 3995202 | E081 | -35902 |
| chr12 | 4005873 | 4006902 | E081 | -24202 |
| chr12 | 4006915 | 4007146 | E081 | -23958 |
| chr12 | 4028556 | 4028606 | E081 | -2498 |
| chr12 | 4029017 | 4029108 | E081 | -1996 |
| chr12 | 4029441 | 4030624 | E081 | -480 |
| chr12 | 4032957 | 4032997 | E081 | 1853 |
| chr12 | 4033028 | 4033068 | E081 | 1924 |
| chr12 | 4033168 | 4033256 | E081 | 2064 |
| chr12 | 4033257 | 4033325 | E081 | 2153 |
| chr12 | 4033428 | 4033604 | E081 | 2324 |
| chr12 | 4037411 | 4039030 | E081 | 6307 |
| chr12 | 4039087 | 4039254 | E081 | 7983 |
| chr12 | 4039385 | 4039753 | E081 | 8281 |
| chr12 | 4039769 | 4039934 | E081 | 8665 |
| chr12 | 4039974 | 4040035 | E081 | 8870 |
| chr12 | 4040063 | 4040237 | E081 | 8959 |
| chr12 | 4040367 | 4040421 | E081 | 9263 |
| chr12 | 4040483 | 4040659 | E081 | 9379 |
| chr12 | 4040742 | 4040802 | E081 | 9638 |
| chr12 | 4040890 | 4041413 | E081 | 9786 |
| chr12 | 4041433 | 4041717 | E081 | 10329 |
| chr12 | 3992303 | 3992671 | E082 | -38433 |
| chr12 | 3992705 | 3992776 | E082 | -38328 |
| chr12 | 3992785 | 3992848 | E082 | -38256 |
| chr12 | 4031029 | 4031125 | E082 | 0 |
| chr12 | 4031145 | 4031254 | E082 | 41 |
| chr12 | 4033028 | 4033068 | E082 | 1924 |
| chr12 | 4033168 | 4033256 | E082 | 2064 |
| chr12 | 4033257 | 4033325 | E082 | 2153 |
| chr12 | 4033428 | 4033604 | E082 | 2324 |
| chr12 | 4037411 | 4039030 | E082 | 6307 |
| chr12 | 4039087 | 4039254 | E082 | 7983 |
| chr12 | 4039385 | 4039753 | E082 | 8281 |
| chr12 | 4039769 | 4039934 | E082 | 8665 |
| chr12 | 4039974 | 4040035 | E082 | 8870 |
| chr12 | 4040063 | 4040237 | E082 | 8959 |
| chr12 | 4040367 | 4040421 | E082 | 9263 |
| chr12 | 4040483 | 4040659 | E082 | 9379 |
| chr12 | 4040742 | 4040802 | E082 | 9638 |
| chr12 | 4040890 | 4041413 | E082 | 9786 |
| chr12 | 4041433 | 4041717 | E082 | 10329 |
| Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
|---|---|---|---|---|
| chr12 | 3981290 | 3983067 | E067 | -48037 |
| chr12 | 3981290 | 3983067 | E068 | -48037 |
| chr12 | 3981290 | 3983067 | E069 | -48037 |
| chr12 | 3981290 | 3983067 | E070 | -48037 |
| chr12 | 3981290 | 3983067 | E071 | -48037 |
| chr12 | 3981290 | 3983067 | E072 | -48037 |
| chr12 | 3981290 | 3983067 | E073 | -48037 |
| chr12 | 3981290 | 3983067 | E074 | -48037 |
| chr12 | 3981290 | 3983067 | E081 | -48037 |
| chr12 | 3981290 | 3983067 | E082 | -48037 |