rs10851664

Homo sapiens
G>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0323 (9675/29920,GnomAD)
C=0263 (7670/29118,TOPMED)
C=0279 (1396/5008,1000G)
C=0422 (1626/3854,ALSPAC)
C=0413 (1531/3708,TWINSUK)
chr15:59708040 (GRCh38.p7) (15q22.2)
AD
GWASdb2
1   publication(s)
See rs on genome
17 Enhancers around
10 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.59708040G>C
GRCh37.p13 chr 15NC_000015.9:g.60000239G>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.965C=0.035
1000GenomesAmericanSub694G=0.610C=0.390
1000GenomesEast AsianSub1008G=0.609C=0.391
1000GenomesEuropeSub1006G=0.579C=0.421
1000GenomesGlobalStudy-wide5008G=0.721C=0.279
1000GenomesSouth AsianSub978G=0.730C=0.270
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.578C=0.422
The Genome Aggregation DatabaseAfricanSub8712G=0.913C=0.087
The Genome Aggregation DatabaseAmericanSub836G=0.660C=0.340
The Genome Aggregation DatabaseEast AsianSub1606G=0.648C=0.352
The Genome Aggregation DatabaseEuropeSub18464G=0.570C=0.429
The Genome Aggregation DatabaseGlobalStudy-wide29920G=0.676C=0.323
The Genome Aggregation DatabaseOtherSub302G=0.570C=0.430
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.736C=0.263
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.587C=0.413
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs108516640.000759alcohol dependence21314694

eQTL of rs10851664 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
Chr15:60000239BNIP2ENSG00000140299.7G>C1.3138e-818506Cerebellum

meQTL of rs10851664 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr155997789959978934E068-21305
chr155998271459982855E068-17384
chr155997789959978934E070-21305
chr156000340360003537E0703164
chr156000358160003834E0703342
chr155997789959978934E071-21305
chr155997907259979131E071-21108
chr155997930659979362E071-20877
chr155997950559979545E071-20694
chr155998271459982855E071-17384
chr155998301259983066E071-17173
chr155997673959976821E074-23418
chr155997907259979131E074-21108
chr155997930659979362E074-20877
chr155997950559979545E074-20694
chr155998271459982855E074-17384
chr156000400460004111E0823765





Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr155998052059982556E067-17683
chr155998052059982556E068-17683
chr155998052059982556E069-17683
chr155998052059982556E070-17683
chr155998052059982556E071-17683
chr155998052059982556E072-17683
chr155998052059982556E073-17683
chr155998052059982556E074-17683
chr155998052059982556E081-17683
chr155998052059982556E082-17683