rs10868555

Homo sapiens
C>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0223 (6698/29936,GnomAD)
A=0185 (5392/29118,TOPMED)
A=0165 (826/5008,1000G)
A=0257 (992/3854,ALSPAC)
A=0270 (1000/3708,TWINSUK)
chr9:87309983 (GRCh38.p7) (9q21.33)
AD
GWASdb2
1   publication(s)
See rs on genome
46 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.87309983C>A
GRCh37.p13 chr 9NC_000009.11:g.89924898C>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.862A=0.138
1000GenomesAmericanSub694C=0.860A=0.140
1000GenomesEast AsianSub1008C=0.846A=0.154
1000GenomesEuropeSub1006C=0.753A=0.247
1000GenomesGlobalStudy-wide5008C=0.835A=0.165
1000GenomesSouth AsianSub978C=0.860A=0.140
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.743A=0.257
The Genome Aggregation DatabaseAfricanSub8716C=0.849A=0.151
The Genome Aggregation DatabaseAmericanSub838C=0.900A=0.100
The Genome Aggregation DatabaseEast AsianSub1620C=0.870A=0.130
The Genome Aggregation DatabaseEuropeSub18460C=0.726A=0.273
The Genome Aggregation DatabaseGlobalStudy-wide29936C=0.776A=0.223
The Genome Aggregation DatabaseOtherSub302C=0.900A=0.100
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.814A=0.185
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.730A=0.270
PMID Title Author Journal
23953852Genome-wide association studies of maximum number of drinks.Pan YJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs108685553.18E-05alcohol consumption23953852

eQTL of rs10868555 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10868555 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr98988502889885947E067-38951
chr98995116389951223E06726265
chr98995132489951729E06726426
chr98988482189885003E068-39895
chr98988502889885947E068-38951
chr98988599289886084E068-38814
chr98988434389884512E069-40386
chr98988468689884771E069-40127
chr98988482189885003E069-39895
chr98988502889885947E069-38951
chr98988599289886084E069-38814
chr98988613089886303E069-38595
chr98988502889885947E070-38951
chr98988934789889407E070-35491
chr98995014289950241E07025244
chr98995116389951223E07026265
chr98995132489951729E07026426
chr98995395789954065E07029059
chr98995407889954180E07029180
chr98995419989954356E07029301
chr98995453389954582E07029635
chr98995458389954657E07029685
chr98995485889954902E07029960
chr98995506089955117E07030162
chr98995512289955296E07030224
chr98995533689955600E07030438
chr98995771389958254E07032815
chr98995832389958450E07033425
chr98996104889961444E07036150
chr98996170589961797E07036807
chr98996185089962136E07036952
chr98988599289886084E073-38814
chr98988613089886303E073-38595
chr98988599289886084E074-38814
chr98988434389884512E081-40386
chr98988468689884771E081-40127
chr98988482189885003E081-39895
chr98988502889885947E081-38951
chr98990904189909637E081-15261
chr98996104889961444E08136150
chr98996170589961797E08136807
chr98996185089962136E08136952
chr98996838889968511E08143490
chr98990904189909637E082-15261
chr98995349489953848E08228596
chr98996104889961444E08236150