rs10869902

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0198 (5956/29958,GnomAD)
A=0185 (5386/29118,TOPMED)
A=0243 (1218/5008,1000G)
A=0242 (932/3854,ALSPAC)
A=0253 (939/3708,TWINSUK)
chr9:77157174 (GRCh38.p7) (9q21.2)
ND
GWASdb2
1   publication(s)
See rs on genome
1 Enhancer around
11 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.77157174G>A
GRCh37.p13 chr 9NC_000009.11:g.79772090G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.962A=0.038
1000GenomesAmericanSub694G=0.620A=0.380
1000GenomesEast AsianSub1008G=0.604A=0.396
1000GenomesEuropeSub1006G=0.767A=0.233
1000GenomesGlobalStudy-wide5008G=0.757A=0.243
1000GenomesSouth AsianSub978G=0.720A=0.280
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.758A=0.242
The Genome Aggregation DatabaseAfricanSub8720G=0.933A=0.067
The Genome Aggregation DatabaseAmericanSub838G=0.560A=0.440
The Genome Aggregation DatabaseEast AsianSub1612G=0.616A=0.384
The Genome Aggregation DatabaseEuropeSub18486G=0.766A=0.233
The Genome Aggregation DatabaseGlobalStudy-wide29958G=0.801A=0.198
The Genome Aggregation DatabaseOtherSub302G=0.790A=0.210
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.815A=0.185
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.747A=0.253
PMID Title Author Journal
17158188Novel genes identified in a high-density genome wide association study for nicotine dependence.Bierut LJHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs108699020.000147nicotine dependence17158188

eQTL of rs10869902 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10869902 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr97979091279791398E08218822

Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr97979142879794327E06719338
chr97978299579783133E06810905
chr97979142879794327E06819338
chr97979142879794327E06919338
chr97979142879794327E07019338
chr97979142879794327E07119338
chr97979142879794327E07219338
chr97979142879794327E07319338
chr97979142879794327E07419338
chr97979142879794327E08119338
chr97979142879794327E08219338