rs10879871

Homo sapiens
T>G
None
Check p-value
SNV (Single Nucleotide Variation)
T==0434 (13006/29926,GnomAD)
T==0492 (14337/29118,TOPMED)
T==0497 (2489/5008,1000G)
T==0345 (1328/3854,ALSPAC)
T==0343 (1271/3708,TWINSUK)
chr12:74986731 (GRCh38.p7) (12q21.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 12NC_000012.12:g.74986731T>G
GRCh37.p13 chr 12NC_000012.11:g.75380511T>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.710G=0.290
1000GenomesAmericanSub694T=0.420G=0.580
1000GenomesEast AsianSub1008T=0.319G=0.681
1000GenomesEuropeSub1006T=0.394G=0.606
1000GenomesGlobalStudy-wide5008T=0.497G=0.503
1000GenomesSouth AsianSub978T=0.550G=0.450
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.345G=0.655
The Genome Aggregation DatabaseAfricanSub8696T=0.633G=0.367
The Genome Aggregation DatabaseAmericanSub834T=0.480G=0.520
The Genome Aggregation DatabaseEast AsianSub1620T=0.316G=0.684
The Genome Aggregation DatabaseEuropeSub18476T=0.347G=0.652
The Genome Aggregation DatabaseGlobalStudy-wide29926T=0.434G=0.565
The Genome Aggregation DatabaseOtherSub300T=0.530G=0.470
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.492G=0.507
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.343G=0.657
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs108798710.00091alcohol dependence20201924

eQTL of rs10879871 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10879871 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.