rs10882215

Homo sapiens
G>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0207 (6219/29944,GnomAD)
T=0265 (7736/29118,TOPMED)
T=0202 (1011/5008,1000G)
T=0176 (680/3854,ALSPAC)
T=0179 (662/3708,TWINSUK)
chr10:93304380 (GRCh38.p7) (10q23.33)
AD
GWASdb2
1   publication(s)
See rs on genome
18 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.93304380G>T
GRCh37.p13 chr 10NC_000010.10:g.95064137G>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.643T=0.357
1000GenomesAmericanSub694G=0.750T=0.250
1000GenomesEast AsianSub1008G=0.934T=0.066
1000GenomesEuropeSub1006G=0.802T=0.198
1000GenomesGlobalStudy-wide5008G=0.798T=0.202
1000GenomesSouth AsianSub978G=0.900T=0.100
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.824T=0.176
The Genome Aggregation DatabaseAfricanSub8694G=0.657T=0.343
The Genome Aggregation DatabaseAmericanSub838G=0.800T=0.200
The Genome Aggregation DatabaseEast AsianSub1622G=0.950T=0.050
The Genome Aggregation DatabaseEuropeSub18488G=0.843T=0.156
The Genome Aggregation DatabaseGlobalStudy-wide29944G=0.792T=0.207
The Genome Aggregation DatabaseOtherSub302G=0.700T=0.300
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.734T=0.265
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.821T=0.179
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs108822150.00084alcohol dependence(early age of onset)20201924
rs108822150.00093alcohol dependence20201924

eQTL of rs10882215 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10882215 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr109510595595106193E06941818
chr109505905995060293E070-3844
chr109507870395078790E07014566
chr109507896595079302E07014828
chr109507952495079578E07015387
chr109509336995094171E07029232
chr109501429595015096E081-49041
chr109503945095041544E081-22593
chr109504847295049330E081-14807
chr109504936295049510E081-14627
chr109504952295049572E081-14565
chr109504975995049799E081-14338
chr109504980895049925E081-14212
chr109505017695050292E081-13845
chr109505048495050577E081-13560
chr109501429595015096E082-49041
chr109507896595079302E08214828
chr109507952495079578E08215387