rs10897449

Homo sapiens
C>T
C11orf84 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0343 (10271/29884,GnomAD)
T=0297 (8660/29118,TOPMED)
T=0312 (1563/5008,1000G)
T=0455 (1752/3854,ALSPAC)
T=0466 (1729/3708,TWINSUK)
chr11:63825149 (GRCh38.p7) (11q13.1)
AD
GWASCatalog
1   publication(s)
See rs on genome

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.63825149C>T
GRCh37.p13 chr 11NC_000011.9:g.63592621C>T

Gene: C11orf84, chromosome 11 open reading frame 84(plus strand)

Molecule type Change Amino acid[Codon] SO Term
SPINDOC transcriptNM_138471.2:c.N/AIntron Variant
SPINDOC transcript variant X2XM_006718437.1:c.N/AIntron Variant
SPINDOC transcript variant X1XM_011544770.1:c.N/AIntron Variant
SPINDOC transcript variant X3XM_011544771.1:c.N/AIntron Variant
SPINDOC transcript variant X4XM_011544772.1:c.N/AIntron Variant
C11orf84 transcript variant X5XM_005273782.2:c.N/AGenic Downstream Transcript Variant
C11orf84 transcript variant X7XM_005273783.2:c.N/AGenic Downstream Transcript Variant
SPINDOC transcript variant X6XR_001747777.1:n.N/AIntron Variant
C11orf84 transcript variant X8XR_001747778.1:n.N/AGenic Downstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.924T=0.076
1000GenomesAmericanSub694C=0.750T=0.250
1000GenomesEast AsianSub1008C=0.817T=0.183
1000GenomesEuropeSub1006C=0.511T=0.489
1000GenomesGlobalStudy-wide5008C=0.688T=0.312
1000GenomesSouth AsianSub978C=0.370T=0.630
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.545T=0.455
The Genome Aggregation DatabaseAfricanSub8702C=0.868T=0.132
The Genome Aggregation DatabaseAmericanSub838C=0.750T=0.250
The Genome Aggregation DatabaseEast AsianSub1612C=0.823T=0.177
The Genome Aggregation DatabaseEuropeSub18432C=0.541T=0.458
The Genome Aggregation DatabaseGlobalStudy-wide29884C=0.656T=0.343
The Genome Aggregation DatabaseOtherSub300C=0.450T=0.550
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.702T=0.297
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.534T=0.466
PMID Title Author Journal
22554406Family-based genome-wide association study of frontal theta oscillations identifies potassium channel gene KCNJ6.Kang SJGenes Brain Behav

P-Value

SNP ID p-value Traits Study
rs108974497E-06alcohol dependence22554406

eQTL of rs10897449 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10897449 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr116357966763579757E067-12864
chr116358271063582779E067-9842
chr116358291463582958E067-9663
chr116358297863583176E067-9445
chr116360982763609902E06717206
chr116360996863610028E06717347
chr116361019163610936E06717570
chr116361227163612424E06719650
chr116361244863612593E06719827
chr116361267363613188E06720052
chr116361346163613739E06720840
chr116361465263615311E06722031
chr116361533463615840E06722713
chr116361752363617563E06724902
chr116361812463618238E06725503
chr116361824163618350E06725620
chr116361836563618904E06725744
chr116361890563619177E06726284
chr116361924363619371E06726622
chr116361948863619646E06726867
chr116362612963626466E06733508
chr116362649863626696E06733877
chr116363028063630321E06737659
chr116363039163630750E06737770
chr116363075663630807E06738135
chr116363332663633483E06740705
chr116363357963633653E06740958
chr116363587163637585E06743250
chr116363759163637686E06744970
chr116363784763638522E06745226
chr116363859863638742E06745977
chr116363936963640277E06746748
chr116364039763641225E06747776
chr116364134863641402E06748727
chr116364145763641664E06748836
chr116364172563641891E06749104
chr116364194263642394E06749321
chr116358271063582779E068-9842
chr116358291463582958E068-9663
chr116358297863583176E068-9445
chr116360949163609592E06816870
chr116360982763609902E06817206
chr116360996863610028E06817347
chr116361019163610936E06817570
chr116361138163611588E06818760
chr116361185963611916E06819238
chr116361218063612230E06819559
chr116361227163612424E06819650
chr116361244863612593E06819827
chr116361267363613188E06820052
chr116361465263615311E06822031
chr116361533463615840E06822713
chr116361723163617290E06824610
chr116361752363617563E06824902
chr116361812463618238E06825503
chr116361824163618350E06825620
chr116361836563618904E06825744
chr116361890563619177E06826284
chr116361924363619371E06826622
chr116361948863619646E06826867
chr116362599763626047E06833376
chr116362612963626466E06833508
chr116362649863626696E06833877
chr116363028063630321E06837659
chr116363039163630750E06837770
chr116363293763632997E06840316
chr116363303563633162E06840414
chr116363319863633286E06840577
chr116363332663633483E06840705
chr116363357963633653E06840958
chr116363376263634145E06841141
chr116363422763634315E06841606
chr116363434863634520E06841727
chr116363458463634785E06841963
chr116363490763635451E06842286
chr116363574263635806E06843121
chr116363587163637585E06843250
chr116363759163637686E06844970
chr116363784763638522E06845226
chr116363859863638742E06845977
chr116363936963640277E06846748
chr116364039763641225E06847776
chr116364134863641402E06848727
chr116364145763641664E06848836
chr116364172563641891E06849104
chr116364194263642394E06849321
chr116356743563567628E069-24993
chr116358271063582779E069-9842
chr116358291463582958E069-9663
chr116358297863583176E069-9445
chr116360982763609902E06917206
chr116360996863610028E06917347
chr116361019163610936E06917570
chr116361138163611588E06918760
chr116361227163612424E06919650
chr116361244863612593E06919827
chr116361267363613188E06920052
chr116361465263615311E06922031
chr116361533463615840E06922713
chr116361723163617290E06924610
chr116361836563618904E06925744
chr116361890563619177E06926284
chr116361924363619371E06926622
chr116361948863619646E06926867
chr116361977263619979E06927151
chr116362018563620256E06927564
chr116362035563620402E06927734
chr116362612963626466E06933508
chr116362649863626696E06933877
chr116363028063630321E06937659
chr116363039163630750E06937770
chr116363075663630807E06938135
chr116363089463630944E06938273
chr116363129863631375E06938677
chr116363255863632613E06939937
chr116363265363632693E06940032
chr116363293763632997E06940316
chr116363303563633162E06940414
chr116363319863633286E06940577
chr116363332663633483E06940705
chr116363357963633653E06940958
chr116363376263634145E06941141
chr116363422763634315E06941606
chr116363434863634520E06941727
chr116363458463634785E06941963
chr116363490763635451E06942286
chr116363574263635806E06943121
chr116363587163637585E06943250
chr116363759163637686E06944970
chr116363784763638522E06945226
chr116363859863638742E06945977
chr116363936963640277E06946748
chr116364039763641225E06947776
chr116364134863641402E06948727
chr116364145763641664E06948836
chr116364172563641891E06949104
chr116364194263642394E06949321
chr116356743563567628E070-24993
chr116357941463579536E070-13085
chr116357966763579757E070-12864
chr116358297863583176E070-9445
chr116358358363583700E070-8921
chr116358375063583941E070-8680
chr116358401463584064E070-8557
chr116358410663584165E070-8456
chr116360393363604038E07011312
chr116360982763609902E07017206
chr116361019163610936E07017570
chr116361218063612230E07019559
chr116361227163612424E07019650
chr116361244863612593E07019827
chr116361267363613188E07020052
chr116363759163637686E07044970
chr116363784763638522E07045226
chr116363859863638742E07045977
chr116358271063582779E071-9842
chr116358291463582958E071-9663
chr116358297863583176E071-9445
chr116358358363583700E071-8921
chr116360949163609592E07116870
chr116360982763609902E07117206
chr116360996863610028E07117347
chr116361019163610936E07117570
chr116361138163611588E07118760
chr116361185963611916E07119238
chr116361218063612230E07119559
chr116361227163612424E07119650
chr116361244863612593E07119827
chr116361267363613188E07120052
chr116361346163613739E07120840
chr116361465263615311E07122031
chr116361533463615840E07122713
chr116361673463616834E07124113
chr116361686663616937E07124245
chr116361706363617133E07124442
chr116361723163617290E07124610
chr116361752363617563E07124902
chr116361812463618238E07125503
chr116361824163618350E07125620
chr116361836563618904E07125744
chr116361890563619177E07126284
chr116361924363619371E07126622
chr116361948863619646E07126867
chr116361977263619979E07127151
chr116362393363624041E07131312
chr116362411963624234E07131498
chr116362599763626047E07133376
chr116362612963626466E07133508
chr116362649863626696E07133877
chr116362971563630036E07137094
chr116363028063630321E07137659
chr116363039163630750E07137770
chr116363075663630807E07138135
chr116363293763632997E07140316
chr116363303563633162E07140414
chr116363319863633286E07140577
chr116363332663633483E07140705
chr116363357963633653E07140958
chr116363376263634145E07141141
chr116363422763634315E07141606
chr116363434863634520E07141727
chr116363458463634785E07141963
chr116363587163637585E07143250
chr116363759163637686E07144970
chr116363784763638522E07145226
chr116363859863638742E07145977
chr116364039763641225E07147776
chr116364134863641402E07148727
chr116364145763641664E07148836
chr116364172563641891E07149104
chr116364194263642394E07149321
chr116357886063578910E072-13711
chr116358271063582779E072-9842
chr116358291463582958E072-9663
chr116358297863583176E072-9445
chr116360982763609902E07217206
chr116360996863610028E07217347
chr116361019163610936E07217570
chr116361218063612230E07219559
chr116361227163612424E07219650
chr116361244863612593E07219827
chr116361267363613188E07220052
chr116361465263615311E07222031
chr116361533463615840E07222713
chr116361673463616834E07224113
chr116361686663616937E07224245
chr116361706363617133E07224442
chr116361723163617290E07224610
chr116361824163618350E07225620
chr116361836563618904E07225744
chr116361890563619177E07226284
chr116361924363619371E07226622
chr116361948863619646E07226867
chr116361977263619979E07227151
chr116362599763626047E07233376
chr116362612963626466E07233508
chr116362649863626696E07233877
chr116362971563630036E07237094
chr116363028063630321E07237659
chr116363039163630750E07237770
chr116363075663630807E07238135
chr116363293763632997E07240316
chr116363303563633162E07240414
chr116363319863633286E07240577
chr116363332663633483E07240705
chr116363357963633653E07240958
chr116363376263634145E07241141
chr116363587163637585E07243250
chr116363759163637686E07244970
chr116363784763638522E07245226
chr116363859863638742E07245977
chr116363936963640277E07246748
chr116364039763641225E07247776
chr116364134863641402E07248727
chr116364145763641664E07248836
chr116364172563641891E07249104
chr116364194263642394E07249321
chr116358271063582779E073-9842
chr116358291463582958E073-9663
chr116358297863583176E073-9445
chr116360982763609902E07317206
chr116360996863610028E07317347
chr116361019163610936E07317570
chr116361138163611588E07318760
chr116361185963611916E07319238
chr116361218063612230E07319559
chr116361227163612424E07319650
chr116361244863612593E07319827
chr116361267363613188E07320052
chr116361346163613739E07320840
chr116361465263615311E07322031
chr116361533463615840E07322713
chr116361686663616937E07324245
chr116361752363617563E07324902
chr116361890563619177E07326284
chr116361924363619371E07326622
chr116362599763626047E07333376
chr116362612963626466E07333508
chr116362649863626696E07333877
chr116363039163630750E07337770
chr116363293763632997E07340316
chr116363303563633162E07340414
chr116363319863633286E07340577
chr116363332663633483E07340705
chr116363357963633653E07340958
chr116363376263634145E07341141
chr116363422763634315E07341606
chr116363434863634520E07341727
chr116363458463634785E07341963
chr116363574263635806E07343121
chr116363587163637585E07343250
chr116363759163637686E07344970
chr116363784763638522E07345226
chr116364039763641225E07347776
chr116364134863641402E07348727
chr116364145763641664E07348836
chr116364172563641891E07349104
chr116364194263642394E07349321
chr116358271063582779E074-9842
chr116358291463582958E074-9663
chr116358297863583176E074-9445
chr116360949163609592E07416870
chr116360982763609902E07417206
chr116360996863610028E07417347
chr116361019163610936E07417570
chr116361227163612424E07419650
chr116361244863612593E07419827
chr116361267363613188E07420052
chr116361465263615311E07422031
chr116361533463615840E07422713
chr116361673463616834E07424113
chr116361686663616937E07424245
chr116361706363617133E07424442
chr116361723163617290E07424610
chr116361752363617563E07424902
chr116361812463618238E07425503
chr116361824163618350E07425620
chr116361836563618904E07425744
chr116361890563619177E07426284
chr116361924363619371E07426622
chr116361948863619646E07426867
chr116362599763626047E07433376
chr116362612963626466E07433508
chr116362649863626696E07433877
chr116363028063630321E07437659
chr116363039163630750E07437770
chr116363075663630807E07438135
chr116363319863633286E07440577
chr116363332663633483E07440705
chr116363357963633653E07440958
chr116363376263634145E07441141
chr116363422763634315E07441606
chr116363434863634520E07441727
chr116363458463634785E07441963
chr116363490763635451E07442286
chr116363574263635806E07443121
chr116363587163637585E07443250
chr116363759163637686E07444970
chr116363784763638522E07445226
chr116363859863638742E07445977
chr116363936963640277E07446748
chr116364039763641225E07447776
chr116364134863641402E07448727
chr116364145763641664E07448836
chr116364172563641891E07449104
chr116364194263642394E07449321
chr116357941463579536E081-13085
chr116357966763579757E081-12864
chr116358271063582779E081-9842
chr116358291463582958E081-9663
chr116358297863583176E081-9445
chr116360982763609902E08117206
chr116360996863610028E08117347
chr116363319863633286E08140577
chr116363332663633483E08140705
chr116363357963633653E08140958
chr116363376263634145E08141141
chr116363759163637686E08144970
chr116363784763638522E08145226
chr116363859863638742E08145977
chr116363936963640277E08146748
chr116357913863579375E082-13246
chr116357941463579536E082-13085
chr116358358363583700E082-8921
chr116358375063583941E082-8680
chr116358401463584064E082-8557
chr116358410663584165E082-8456
chr116363255863632613E08239937
chr116363265363632693E08240032
chr116363293763632997E08240316










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr116357999563582323E067-10298
chr116360436363608672E06711742
chr116357999563582323E068-10298
chr116360436363608672E06811742
chr116357999563582323E069-10298
chr116360436363608672E06911742
chr116357999563582323E070-10298
chr116360436363608672E07011742
chr116357999563582323E071-10298
chr116360436363608672E07111742
chr116357999563582323E072-10298
chr116360436363608672E07211742
chr116357999563582323E073-10298
chr116360436363608672E07311742
chr116357999563582323E074-10298
chr116360436363608672E07411742
chr116357999563582323E081-10298
chr116357999563582323E082-10298
chr116360436363608672E08211742