Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 9 | NC_000009.12:g.89634669G>A |
GRCh37.p13 chr 9 | NC_000009.11:g.92249584G>A |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.320 | A=0.680 |
1000Genomes | American | Sub | 694 | G=0.460 | A=0.540 |
1000Genomes | East Asian | Sub | 1008 | G=0.490 | A=0.510 |
1000Genomes | Europe | Sub | 1006 | G=0.723 | A=0.277 |
1000Genomes | Global | Study-wide | 5008 | G=0.462 | A=0.538 |
1000Genomes | South Asian | Sub | 978 | G=0.360 | A=0.640 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.730 | A=0.270 |
The Genome Aggregation Database | African | Sub | 8698 | G=0.387 | A=0.613 |
The Genome Aggregation Database | American | Sub | 834 | G=0.430 | A=0.570 |
The Genome Aggregation Database | East Asian | Sub | 1614 | G=0.448 | A=0.552 |
The Genome Aggregation Database | Europe | Sub | 18462 | G=0.744 | A=0.255 |
The Genome Aggregation Database | Global | Study-wide | 29908 | G=0.614 | A=0.385 |
The Genome Aggregation Database | Other | Sub | 300 | G=0.600 | A=0.400 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.535 | A=0.465 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.727 | A=0.273 |
PMID | Title | Author | Journal |
---|---|---|---|
23543094 | Testing for associations between loci and environmental gradients using latent factor mixed models. | Frichot E | Mol Biol Evol |
21529783 | A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications. | Heath AC | Biol Psychiatry |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs10908907 | 0.000006 | alcoholism (heaviness of drinking) | 21529783 |
rs10908907 | 6.00E-06 | alcohol dependence | 21529783 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr9 | 92222708 | 92222793 | E067 | -26791 |
chr9 | 92237128 | 92237294 | E067 | -12290 |
chr9 | 92237308 | 92237405 | E067 | -12179 |
chr9 | 92237516 | 92237566 | E067 | -12018 |
chr9 | 92237993 | 92238086 | E067 | -11498 |
chr9 | 92238131 | 92239305 | E067 | -10279 |
chr9 | 92249813 | 92250610 | E067 | 229 |
chr9 | 92250614 | 92250705 | E067 | 1030 |
chr9 | 92250760 | 92251158 | E067 | 1176 |
chr9 | 92254822 | 92254917 | E067 | 5238 |
chr9 | 92254934 | 92255126 | E067 | 5350 |
chr9 | 92255181 | 92255240 | E067 | 5597 |
chr9 | 92255242 | 92255709 | E067 | 5658 |
chr9 | 92274658 | 92274702 | E067 | 25074 |
chr9 | 92274790 | 92274904 | E067 | 25206 |
chr9 | 92275009 | 92275116 | E067 | 25425 |
chr9 | 92275861 | 92275932 | E067 | 26277 |
chr9 | 92275942 | 92275996 | E067 | 26358 |
chr9 | 92276111 | 92276255 | E067 | 26527 |
chr9 | 92289627 | 92291919 | E067 | 40043 |
chr9 | 92292012 | 92292308 | E067 | 42428 |
chr9 | 92226738 | 92226798 | E068 | -22786 |
chr9 | 92234885 | 92234944 | E068 | -14640 |
chr9 | 92235694 | 92235744 | E068 | -13840 |
chr9 | 92236065 | 92236111 | E068 | -13473 |
chr9 | 92236639 | 92236741 | E068 | -12843 |
chr9 | 92237128 | 92237294 | E068 | -12290 |
chr9 | 92237308 | 92237405 | E068 | -12179 |
chr9 | 92237516 | 92237566 | E068 | -12018 |
chr9 | 92237993 | 92238086 | E068 | -11498 |
chr9 | 92238131 | 92239305 | E068 | -10279 |
chr9 | 92239588 | 92239751 | E068 | -9833 |
chr9 | 92253978 | 92254236 | E068 | 4394 |
chr9 | 92254276 | 92254796 | E068 | 4692 |
chr9 | 92254822 | 92254917 | E068 | 5238 |
chr9 | 92254934 | 92255126 | E068 | 5350 |
chr9 | 92255181 | 92255240 | E068 | 5597 |
chr9 | 92273058 | 92273170 | E068 | 23474 |
chr9 | 92273212 | 92273338 | E068 | 23628 |
chr9 | 92273469 | 92273616 | E068 | 23885 |
chr9 | 92273935 | 92274134 | E068 | 24351 |
chr9 | 92276111 | 92276255 | E068 | 26527 |
chr9 | 92289627 | 92291919 | E068 | 40043 |
chr9 | 92292012 | 92292308 | E068 | 42428 |
chr9 | 92292333 | 92293865 | E068 | 42749 |
chr9 | 92293867 | 92293940 | E068 | 44283 |
chr9 | 92293942 | 92294297 | E068 | 44358 |
chr9 | 92236639 | 92236741 | E069 | -12843 |
chr9 | 92237128 | 92237294 | E069 | -12290 |
chr9 | 92237308 | 92237405 | E069 | -12179 |
chr9 | 92237516 | 92237566 | E069 | -12018 |
chr9 | 92237993 | 92238086 | E069 | -11498 |
chr9 | 92238131 | 92239305 | E069 | -10279 |
chr9 | 92239588 | 92239751 | E069 | -9833 |
chr9 | 92253978 | 92254236 | E069 | 4394 |
chr9 | 92254276 | 92254796 | E069 | 4692 |
chr9 | 92254822 | 92254917 | E069 | 5238 |
chr9 | 92254934 | 92255126 | E069 | 5350 |
chr9 | 92255181 | 92255240 | E069 | 5597 |
chr9 | 92255242 | 92255709 | E069 | 5658 |
chr9 | 92269601 | 92269659 | E069 | 20017 |
chr9 | 92269706 | 92269878 | E069 | 20122 |
chr9 | 92269882 | 92269947 | E069 | 20298 |
chr9 | 92270060 | 92271251 | E069 | 20476 |
chr9 | 92274658 | 92274702 | E069 | 25074 |
chr9 | 92276111 | 92276255 | E069 | 26527 |
chr9 | 92289627 | 92291919 | E069 | 40043 |
chr9 | 92292012 | 92292308 | E069 | 42428 |
chr9 | 92292333 | 92293865 | E069 | 42749 |
chr9 | 92293867 | 92293940 | E069 | 44283 |
chr9 | 92216380 | 92216445 | E070 | -33139 |
chr9 | 92216481 | 92216536 | E070 | -33048 |
chr9 | 92216551 | 92216612 | E070 | -32972 |
chr9 | 92216761 | 92216964 | E070 | -32620 |
chr9 | 92216986 | 92217040 | E070 | -32544 |
chr9 | 92217082 | 92217136 | E070 | -32448 |
chr9 | 92217206 | 92217404 | E070 | -32180 |
chr9 | 92217431 | 92217483 | E070 | -32101 |
chr9 | 92223482 | 92223934 | E070 | -25650 |
chr9 | 92223959 | 92224097 | E070 | -25487 |
chr9 | 92224366 | 92224420 | E070 | -25164 |
chr9 | 92224547 | 92224617 | E070 | -24967 |
chr9 | 92224703 | 92224760 | E070 | -24824 |
chr9 | 92224786 | 92224898 | E070 | -24686 |
chr9 | 92234051 | 92234322 | E070 | -15262 |
chr9 | 92236639 | 92236741 | E070 | -12843 |
chr9 | 92237128 | 92237294 | E070 | -12290 |
chr9 | 92237993 | 92238086 | E070 | -11498 |
chr9 | 92238131 | 92239305 | E070 | -10279 |
chr9 | 92239588 | 92239751 | E070 | -9833 |
chr9 | 92240335 | 92240421 | E070 | -9163 |
chr9 | 92240459 | 92240517 | E070 | -9067 |
chr9 | 92240723 | 92240900 | E070 | -8684 |
chr9 | 92250614 | 92250705 | E070 | 1030 |
chr9 | 92250760 | 92251158 | E070 | 1176 |
chr9 | 92253978 | 92254236 | E070 | 4394 |
chr9 | 92254276 | 92254796 | E070 | 4692 |
chr9 | 92254822 | 92254917 | E070 | 5238 |
chr9 | 92254934 | 92255126 | E070 | 5350 |
chr9 | 92255181 | 92255240 | E070 | 5597 |
chr9 | 92255242 | 92255709 | E070 | 5658 |
chr9 | 92269706 | 92269878 | E070 | 20122 |
chr9 | 92269882 | 92269947 | E070 | 20298 |
chr9 | 92270060 | 92271251 | E070 | 20476 |
chr9 | 92273212 | 92273338 | E070 | 23628 |
chr9 | 92273469 | 92273616 | E070 | 23885 |
chr9 | 92275239 | 92275417 | E070 | 25655 |
chr9 | 92275467 | 92275567 | E070 | 25883 |
chr9 | 92275625 | 92275675 | E070 | 26041 |
chr9 | 92275780 | 92275852 | E070 | 26196 |
chr9 | 92275861 | 92275932 | E070 | 26277 |
chr9 | 92275942 | 92275996 | E070 | 26358 |
chr9 | 92276111 | 92276255 | E070 | 26527 |
chr9 | 92277546 | 92278410 | E070 | 27962 |
chr9 | 92278452 | 92278822 | E070 | 28868 |
chr9 | 92278852 | 92278906 | E070 | 29268 |
chr9 | 92278927 | 92279107 | E070 | 29343 |
chr9 | 92282674 | 92283994 | E070 | 33090 |
chr9 | 92289430 | 92289480 | E070 | 39846 |
chr9 | 92289498 | 92289552 | E070 | 39914 |
chr9 | 92289627 | 92291919 | E070 | 40043 |
chr9 | 92292012 | 92292308 | E070 | 42428 |
chr9 | 92292333 | 92293865 | E070 | 42749 |
chr9 | 92293867 | 92293940 | E070 | 44283 |
chr9 | 92293942 | 92294297 | E070 | 44358 |
chr9 | 92294379 | 92294515 | E070 | 44795 |
chr9 | 92294561 | 92294809 | E070 | 44977 |
chr9 | 92294899 | 92295005 | E070 | 45315 |
chr9 | 92298716 | 92298803 | E070 | 49132 |
chr9 | 92298839 | 92299014 | E070 | 49255 |
chr9 | 92226253 | 92226559 | E071 | -23025 |
chr9 | 92237128 | 92237294 | E071 | -12290 |
chr9 | 92237308 | 92237405 | E071 | -12179 |
chr9 | 92237516 | 92237566 | E071 | -12018 |
chr9 | 92237993 | 92238086 | E071 | -11498 |
chr9 | 92238131 | 92239305 | E071 | -10279 |
chr9 | 92253811 | 92253916 | E071 | 4227 |
chr9 | 92253978 | 92254236 | E071 | 4394 |
chr9 | 92254276 | 92254796 | E071 | 4692 |
chr9 | 92254822 | 92254917 | E071 | 5238 |
chr9 | 92254934 | 92255126 | E071 | 5350 |
chr9 | 92255181 | 92255240 | E071 | 5597 |
chr9 | 92255242 | 92255709 | E071 | 5658 |
chr9 | 92269706 | 92269878 | E071 | 20122 |
chr9 | 92269882 | 92269947 | E071 | 20298 |
chr9 | 92274790 | 92274904 | E071 | 25206 |
chr9 | 92275009 | 92275116 | E071 | 25425 |
chr9 | 92275239 | 92275417 | E071 | 25655 |
chr9 | 92275467 | 92275567 | E071 | 25883 |
chr9 | 92275625 | 92275675 | E071 | 26041 |
chr9 | 92275780 | 92275852 | E071 | 26196 |
chr9 | 92275861 | 92275932 | E071 | 26277 |
chr9 | 92275942 | 92275996 | E071 | 26358 |
chr9 | 92276111 | 92276255 | E071 | 26527 |
chr9 | 92289627 | 92291919 | E071 | 40043 |
chr9 | 92292012 | 92292308 | E071 | 42428 |
chr9 | 92292333 | 92293865 | E071 | 42749 |
chr9 | 92293867 | 92293940 | E071 | 44283 |
chr9 | 92293942 | 92294297 | E071 | 44358 |
chr9 | 92234885 | 92234944 | E072 | -14640 |
chr9 | 92236065 | 92236111 | E072 | -13473 |
chr9 | 92236639 | 92236741 | E072 | -12843 |
chr9 | 92237128 | 92237294 | E072 | -12290 |
chr9 | 92237308 | 92237405 | E072 | -12179 |
chr9 | 92237516 | 92237566 | E072 | -12018 |
chr9 | 92237993 | 92238086 | E072 | -11498 |
chr9 | 92238131 | 92239305 | E072 | -10279 |
chr9 | 92249813 | 92250610 | E072 | 229 |
chr9 | 92250614 | 92250705 | E072 | 1030 |
chr9 | 92253424 | 92253651 | E072 | 3840 |
chr9 | 92253811 | 92253916 | E072 | 4227 |
chr9 | 92253978 | 92254236 | E072 | 4394 |
chr9 | 92254276 | 92254796 | E072 | 4692 |
chr9 | 92254822 | 92254917 | E072 | 5238 |
chr9 | 92254934 | 92255126 | E072 | 5350 |
chr9 | 92255181 | 92255240 | E072 | 5597 |
chr9 | 92255242 | 92255709 | E072 | 5658 |
chr9 | 92289627 | 92291919 | E072 | 40043 |
chr9 | 92292012 | 92292308 | E072 | 42428 |
chr9 | 92292333 | 92293865 | E072 | 42749 |
chr9 | 92293867 | 92293940 | E072 | 44283 |
chr9 | 92234885 | 92234944 | E073 | -14640 |
chr9 | 92235014 | 92235094 | E073 | -14490 |
chr9 | 92235361 | 92235411 | E073 | -14173 |
chr9 | 92235480 | 92235546 | E073 | -14038 |
chr9 | 92235694 | 92235744 | E073 | -13840 |
chr9 | 92236065 | 92236111 | E073 | -13473 |
chr9 | 92236639 | 92236741 | E073 | -12843 |
chr9 | 92237128 | 92237294 | E073 | -12290 |
chr9 | 92237308 | 92237405 | E073 | -12179 |
chr9 | 92237516 | 92237566 | E073 | -12018 |
chr9 | 92237993 | 92238086 | E073 | -11498 |
chr9 | 92238131 | 92239305 | E073 | -10279 |
chr9 | 92239588 | 92239751 | E073 | -9833 |
chr9 | 92253424 | 92253651 | E073 | 3840 |
chr9 | 92253811 | 92253916 | E073 | 4227 |
chr9 | 92253978 | 92254236 | E073 | 4394 |
chr9 | 92254276 | 92254796 | E073 | 4692 |
chr9 | 92254822 | 92254917 | E073 | 5238 |
chr9 | 92254934 | 92255126 | E073 | 5350 |
chr9 | 92255181 | 92255240 | E073 | 5597 |
chr9 | 92255242 | 92255709 | E073 | 5658 |
chr9 | 92256046 | 92256107 | E073 | 6462 |
chr9 | 92256183 | 92256233 | E073 | 6599 |
chr9 | 92271252 | 92271387 | E073 | 21668 |
chr9 | 92271391 | 92271486 | E073 | 21807 |
chr9 | 92275467 | 92275567 | E073 | 25883 |
chr9 | 92275625 | 92275675 | E073 | 26041 |
chr9 | 92275780 | 92275852 | E073 | 26196 |
chr9 | 92275861 | 92275932 | E073 | 26277 |
chr9 | 92275942 | 92275996 | E073 | 26358 |
chr9 | 92277546 | 92278410 | E073 | 27962 |
chr9 | 92292012 | 92292308 | E073 | 42428 |
chr9 | 92292333 | 92293865 | E073 | 42749 |
chr9 | 92234885 | 92234944 | E074 | -14640 |
chr9 | 92236065 | 92236111 | E074 | -13473 |
chr9 | 92236639 | 92236741 | E074 | -12843 |
chr9 | 92237128 | 92237294 | E074 | -12290 |
chr9 | 92237308 | 92237405 | E074 | -12179 |
chr9 | 92237516 | 92237566 | E074 | -12018 |
chr9 | 92237993 | 92238086 | E074 | -11498 |
chr9 | 92238131 | 92239305 | E074 | -10279 |
chr9 | 92239588 | 92239751 | E074 | -9833 |
chr9 | 92253071 | 92253399 | E074 | 3487 |
chr9 | 92253424 | 92253651 | E074 | 3840 |
chr9 | 92253811 | 92253916 | E074 | 4227 |
chr9 | 92253978 | 92254236 | E074 | 4394 |
chr9 | 92254276 | 92254796 | E074 | 4692 |
chr9 | 92254822 | 92254917 | E074 | 5238 |
chr9 | 92254934 | 92255126 | E074 | 5350 |
chr9 | 92255181 | 92255240 | E074 | 5597 |
chr9 | 92255242 | 92255709 | E074 | 5658 |
chr9 | 92256046 | 92256107 | E074 | 6462 |
chr9 | 92256183 | 92256233 | E074 | 6599 |
chr9 | 92269601 | 92269659 | E074 | 20017 |
chr9 | 92269706 | 92269878 | E074 | 20122 |
chr9 | 92269882 | 92269947 | E074 | 20298 |
chr9 | 92275861 | 92275932 | E074 | 26277 |
chr9 | 92275942 | 92275996 | E074 | 26358 |
chr9 | 92276111 | 92276255 | E074 | 26527 |
chr9 | 92289430 | 92289480 | E074 | 39846 |
chr9 | 92289498 | 92289552 | E074 | 39914 |
chr9 | 92289627 | 92291919 | E074 | 40043 |
chr9 | 92292012 | 92292308 | E074 | 42428 |
chr9 | 92292333 | 92293865 | E074 | 42749 |
chr9 | 92293867 | 92293940 | E074 | 44283 |
chr9 | 92293942 | 92294297 | E074 | 44358 |
chr9 | 92223201 | 92223418 | E081 | -26166 |
chr9 | 92223482 | 92223934 | E081 | -25650 |
chr9 | 92223959 | 92224097 | E081 | -25487 |
chr9 | 92224366 | 92224420 | E081 | -25164 |
chr9 | 92224547 | 92224617 | E081 | -24967 |
chr9 | 92224703 | 92224760 | E081 | -24824 |
chr9 | 92224786 | 92224898 | E081 | -24686 |
chr9 | 92225115 | 92225165 | E081 | -24419 |
chr9 | 92225300 | 92225448 | E081 | -24136 |
chr9 | 92225537 | 92225644 | E081 | -23940 |
chr9 | 92237993 | 92238086 | E081 | -11498 |
chr9 | 92238131 | 92239305 | E081 | -10279 |
chr9 | 92239588 | 92239751 | E081 | -9833 |
chr9 | 92240335 | 92240421 | E081 | -9163 |
chr9 | 92240459 | 92240517 | E081 | -9067 |
chr9 | 92240723 | 92240900 | E081 | -8684 |
chr9 | 92241212 | 92241477 | E081 | -8107 |
chr9 | 92241516 | 92241683 | E081 | -7901 |
chr9 | 92244883 | 92245035 | E081 | -4549 |
chr9 | 92245134 | 92245304 | E081 | -4280 |
chr9 | 92253811 | 92253916 | E081 | 4227 |
chr9 | 92253978 | 92254236 | E081 | 4394 |
chr9 | 92254276 | 92254796 | E081 | 4692 |
chr9 | 92254822 | 92254917 | E081 | 5238 |
chr9 | 92254934 | 92255126 | E081 | 5350 |
chr9 | 92255181 | 92255240 | E081 | 5597 |
chr9 | 92255242 | 92255709 | E081 | 5658 |
chr9 | 92256046 | 92256107 | E081 | 6462 |
chr9 | 92256183 | 92256233 | E081 | 6599 |
chr9 | 92256550 | 92256731 | E081 | 6966 |
chr9 | 92256838 | 92256888 | E081 | 7254 |
chr9 | 92256941 | 92257256 | E081 | 7357 |
chr9 | 92257415 | 92257469 | E081 | 7831 |
chr9 | 92257513 | 92258073 | E081 | 7929 |
chr9 | 92258114 | 92258285 | E081 | 8530 |
chr9 | 92258319 | 92258373 | E081 | 8735 |
chr9 | 92261511 | 92261838 | E081 | 11927 |
chr9 | 92261960 | 92262010 | E081 | 12376 |
chr9 | 92262202 | 92262252 | E081 | 12618 |
chr9 | 92262423 | 92262627 | E081 | 12839 |
chr9 | 92262773 | 92262906 | E081 | 13189 |
chr9 | 92275239 | 92275417 | E081 | 25655 |
chr9 | 92275467 | 92275567 | E081 | 25883 |
chr9 | 92275625 | 92275675 | E081 | 26041 |
chr9 | 92275780 | 92275852 | E081 | 26196 |
chr9 | 92275861 | 92275932 | E081 | 26277 |
chr9 | 92275942 | 92275996 | E081 | 26358 |
chr9 | 92276111 | 92276255 | E081 | 26527 |
chr9 | 92277546 | 92278410 | E081 | 27962 |
chr9 | 92289627 | 92291919 | E081 | 40043 |
chr9 | 92292012 | 92292308 | E081 | 42428 |
chr9 | 92292333 | 92293865 | E081 | 42749 |
chr9 | 92293867 | 92293940 | E081 | 44283 |
chr9 | 92293942 | 92294297 | E081 | 44358 |
chr9 | 92298716 | 92298803 | E081 | 49132 |
chr9 | 92298839 | 92299014 | E081 | 49255 |
chr9 | 92224366 | 92224420 | E082 | -25164 |
chr9 | 92224547 | 92224617 | E082 | -24967 |
chr9 | 92224703 | 92224760 | E082 | -24824 |
chr9 | 92224786 | 92224898 | E082 | -24686 |
chr9 | 92225115 | 92225165 | E082 | -24419 |
chr9 | 92238131 | 92239305 | E082 | -10279 |
chr9 | 92239588 | 92239751 | E082 | -9833 |
chr9 | 92254276 | 92254796 | E082 | 4692 |
chr9 | 92261511 | 92261838 | E082 | 11927 |
chr9 | 92261960 | 92262010 | E082 | 12376 |
chr9 | 92262202 | 92262252 | E082 | 12618 |
chr9 | 92262423 | 92262627 | E082 | 12839 |
chr9 | 92276111 | 92276255 | E082 | 26527 |
chr9 | 92277546 | 92278410 | E082 | 27962 |
chr9 | 92289627 | 92291919 | E082 | 40043 |
chr9 | 92292012 | 92292308 | E082 | 42428 |
chr9 | 92292333 | 92293865 | E082 | 42749 |
chr9 | 92293867 | 92293940 | E082 | 44283 |
chr9 | 92293942 | 92294297 | E082 | 44358 |
chr9 | 92294379 | 92294515 | E082 | 44795 |
chr9 | 92298716 | 92298803 | E082 | 49132 |
chr9 | 92298839 | 92299014 | E082 | 49255 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr9 | 92217817 | 92222620 | E067 | -26964 |
chr9 | 92217817 | 92222620 | E068 | -26964 |
chr9 | 92217817 | 92222620 | E069 | -26964 |
chr9 | 92217817 | 92222620 | E070 | -26964 |
chr9 | 92217817 | 92222620 | E071 | -26964 |
chr9 | 92217817 | 92222620 | E072 | -26964 |
chr9 | 92217817 | 92222620 | E073 | -26964 |
chr9 | 92217817 | 92222620 | E074 | -26964 |
chr9 | 92217817 | 92222620 | E081 | -26964 |
chr9 | 92217817 | 92222620 | E082 | -26964 |