SNP Detail Info-rs10916143

Variant Details Frequency Publications p-values eSNP meSNP

Genomic Coordinates

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.227427047A>T
GRCh37.p13 chr 1	NC_000001.10:g.227614748A>T

Population Frequency

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.572	T=0.428
1000Genomes	American	Sub	694	A=0.600	T=0.400
1000Genomes	East Asian	Sub	1008	A=0.604	T=0.396
1000Genomes	Europe	Sub	1006	A=0.555	T=0.445
1000Genomes	Global	Study-wide	5008	A=0.582	T=0.418
1000Genomes	South Asian	Sub	978	A=0.590	T=0.410

PMID	Title	Author	Journal
29460428	Genomewide Association Study of Alcohol Dependence and Related Traits in a Thai Population.	Gelernter J	Alcohol Clin Exp Res

P-Value

SNP ID	p-value	Traits	Study
rs10916143	8E-07	alcohol consumption measurement	29460428

eQTL of rs10916143 in Brain tissues (GTEx Analysis Release V7)

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

meQTL of rs10916143 in Fetal Brain

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Enhancer Annotation (GRCh37.p13)

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr1	227612805	227612939	E067	-1809
chr1	227615542	227615605	E067	794
chr1	227615962	227616037	E067	1214
chr1	227616312	227616370	E067	1564
chr1	227616420	227616904	E067	1672
chr1	227616953	227617018	E067	2205
chr1	227617190	227617777	E067	2442
chr1	227618254	227618314	E067	3506
chr1	227618610	227618670	E067	3862
chr1	227621714	227621930	E067	6966
chr1	227622566	227622616	E067	7818
chr1	227622788	227623266	E067	8040
chr1	227624797	227624892	E067	10049
chr1	227631973	227632297	E067	17225
chr1	227615542	227615605	E068	794
chr1	227615962	227616037	E068	1214
chr1	227616312	227616370	E068	1564
chr1	227616420	227616904	E068	1672
chr1	227616953	227617018	E068	2205
chr1	227617190	227617777	E068	2442
chr1	227618254	227618314	E068	3506
chr1	227618610	227618670	E068	3862
chr1	227618929	227618980	E068	4181
chr1	227619164	227619231	E068	4416
chr1	227619269	227620032	E068	4521
chr1	227620297	227620377	E068	5549
chr1	227621714	227621930	E068	6966
chr1	227622788	227623266	E068	8040
chr1	227624797	227624892	E068	10049
chr1	227628444	227628659	E068	13696
chr1	227628729	227628843	E068	13981
chr1	227631973	227632297	E068	17225
chr1	227635363	227635692	E068	20615
chr1	227612298	227612453	E069	-2295
chr1	227615542	227615605	E069	794
chr1	227615962	227616037	E069	1214
chr1	227616312	227616370	E069	1564
chr1	227616420	227616904	E069	1672
chr1	227616953	227617018	E069	2205
chr1	227617190	227617777	E069	2442
chr1	227618254	227618314	E069	3506
chr1	227618610	227618670	E069	3862
chr1	227618929	227618980	E069	4181
chr1	227619164	227619231	E069	4416
chr1	227619269	227620032	E069	4521
chr1	227620297	227620377	E069	5549
chr1	227621714	227621930	E069	6966
chr1	227622566	227622616	E069	7818
chr1	227622788	227623266	E069	8040
chr1	227624797	227624892	E069	10049
chr1	227628444	227628659	E069	13696
chr1	227628729	227628843	E069	13981
chr1	227628901	227629087	E069	14153
chr1	227631973	227632297	E069	17225
chr1	227633000	227633257	E069	18252
chr1	227612298	227612453	E071	-2295
chr1	227615221	227615281	E071	473
chr1	227615542	227615605	E071	794
chr1	227615962	227616037	E071	1214
chr1	227616312	227616370	E071	1564
chr1	227616420	227616904	E071	1672
chr1	227616953	227617018	E071	2205
chr1	227617190	227617777	E071	2442
chr1	227618254	227618314	E071	3506
chr1	227618610	227618670	E071	3862
chr1	227618929	227618980	E071	4181
chr1	227619164	227619231	E071	4416
chr1	227619269	227620032	E071	4521
chr1	227620297	227620377	E071	5549
chr1	227621714	227621930	E071	6966
chr1	227622566	227622616	E071	7818
chr1	227622788	227623266	E071	8040
chr1	227623412	227623462	E071	8664
chr1	227624797	227624892	E071	10049
chr1	227628444	227628659	E071	13696
chr1	227628729	227628843	E071	13981
chr1	227628901	227629087	E071	14153
chr1	227631973	227632297	E071	17225
chr1	227612298	227612453	E072	-2295
chr1	227612805	227612939	E072	-1809
chr1	227615542	227615605	E072	794
chr1	227615962	227616037	E072	1214
chr1	227616312	227616370	E072	1564
chr1	227616420	227616904	E072	1672
chr1	227616953	227617018	E072	2205
chr1	227617190	227617777	E072	2442
chr1	227618254	227618314	E072	3506
chr1	227618610	227618670	E072	3862
chr1	227618929	227618980	E072	4181
chr1	227619164	227619231	E072	4416
chr1	227619269	227620032	E072	4521
chr1	227620297	227620377	E072	5549
chr1	227621714	227621930	E072	6966
chr1	227622566	227622616	E072	7818
chr1	227622788	227623266	E072	8040
chr1	227623412	227623462	E072	8664
chr1	227628444	227628659	E072	13696
chr1	227628729	227628843	E072	13981
chr1	227628901	227629087	E072	14153
chr1	227631973	227632297	E072	17225
chr1	227641453	227641661	E072	26705
chr1	227641794	227641851	E072	27046
chr1	227616312	227616370	E073	1564
chr1	227616420	227616904	E073	1672
chr1	227616953	227617018	E073	2205
chr1	227617190	227617777	E073	2442
chr1	227618254	227618314	E073	3506
chr1	227619269	227620032	E073	4521
chr1	227620297	227620377	E073	5549
chr1	227622788	227623266	E073	8040
chr1	227623412	227623462	E073	8664
chr1	227624797	227624892	E073	10049
chr1	227628729	227628843	E073	13981
chr1	227641794	227641851	E073	27046
chr1	227615962	227616037	E074	1214
chr1	227616312	227616370	E074	1564
chr1	227616420	227616904	E074	1672
chr1	227616953	227617018	E074	2205
chr1	227617190	227617777	E074	2442
chr1	227618254	227618314	E074	3506
chr1	227618610	227618670	E074	3862
chr1	227618929	227618980	E074	4181
chr1	227619164	227619231	E074	4416
chr1	227621714	227621930	E074	6966
chr1	227622566	227622616	E074	7818
chr1	227622788	227623266	E074	8040
chr1	227624797	227624892	E074	10049
chr1	227628444	227628659	E074	13696
chr1	227628729	227628843	E074	13981
chr1	227628901	227629087	E074	14153
chr1	227629763	227629933	E074	15015
chr1	227631973	227632297	E074	17225
chr1	227619164	227619231	E081	4416
chr1	227619269	227620032	E081	4521
chr1	227621714	227621930	E081	6966
chr1	227622566	227622616	E081	7818
chr1	227622788	227623266	E081	8040
chr1	227623412	227623462	E081	8664
chr1	227624797	227624892	E081	10049
chr1	227616420	227616904	E082	1672
chr1	227616953	227617018	E082	2205

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr1	227625293	227625680	E067	10545
chr1	227625293	227625680	E068	10545
chr1	227625293	227625680	E069	10545
chr1	227625293	227625680	E071	10545
chr1	227625293	227625680	E072	10545
chr1	227625293	227625680	E073	10545
chr1	227625293	227625680	E074	10545

rs10916143

Genomic Coordinates

Population Frequency

P-Value

eQTL of rs10916143 in Brain tissues (GTEx Analysis Release V7)

meQTL of rs10916143 in Fetal Brain

Genomic View

Chromatin Interaction

Enhancer Annotation (GRCh37.p13)

Promoter Annotation (GRCh37.p13)