rs10923714

Homo sapiens
G>A
TBX15 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0381 (11405/29926,GnomAD)
A=0354 (10324/29118,TOPMED)
A=0260 (1304/5008,1000G)
A=0419 (1614/3854,ALSPAC)
A=0442 (1639/3708,TWINSUK)
chr1:118970290 (GRCh38.p7) (1p12)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
5 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 1NC_000001.11:g.118970290G>A
GRCh37.p13 chr 1NC_000001.10:g.119512913G>A
TBX15 RefSeqGeneNG_013361.1:g.24267C>T

Gene: TBX15, T-box 15(minus strand)

Molecule type Change Amino acid[Codon] SO Term
TBX15 transcript variant 2NM_152380.2:c.N/AIntron Variant
TBX15 transcript variant X1XM_005271161.3:c.N/AIntron Variant
TBX15 transcript variant X2XM_005271162.1:c.N/AIntron Variant
TBX15 transcript variant X2XM_011542052.2:c.N/AGenic Upstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.730A=0.270
1000GenomesAmericanSub694G=0.770A=0.230
1000GenomesEast AsianSub1008G=0.935A=0.065
1000GenomesEuropeSub1006G=0.590A=0.410
1000GenomesGlobalStudy-wide5008G=0.740A=0.260
1000GenomesSouth AsianSub978G=0.690A=0.310
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.581A=0.419
The Genome Aggregation DatabaseAfricanSub8710G=0.707A=0.293
The Genome Aggregation DatabaseAmericanSub838G=0.750A=0.250
The Genome Aggregation DatabaseEast AsianSub1618G=0.930A=0.070
The Genome Aggregation DatabaseEuropeSub18460G=0.542A=0.457
The Genome Aggregation DatabaseGlobalStudy-wide29926G=0.618A=0.381
The Genome Aggregation DatabaseOtherSub300G=0.700A=0.300
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.645A=0.354
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.558A=0.442
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs109237140.000749alcohol dependence21314694

eQTL of rs10923714 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10923714 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr1119528968119531845E06716055
chr1119521446119522995E0688533
chr1119521446119522995E0698533
chr1119528968119531845E07116055
chr1119528968119531845E07316055