Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 2 | NC_000002.12:g.141772551G>A |
GRCh38.p7 chr 2 | NC_000002.12:g.141772551G>T |
GRCh37.p13 chr 2 | NC_000002.11:g.142530120G>A |
GRCh37.p13 chr 2 | NC_000002.11:g.142530120G>T |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
LRP1B transcript | NM_018557.2:c. | N/A | Intron Variant |
LRP1B transcript variant X1 | XM_017004341.1:c. | N/A | Intron Variant |
LRP1B transcript variant X3 | XM_017004342.1:c. | N/A | Genic Upstream Transcript Variant |
LRP1B transcript variant X2 | XR_001738778.1:n. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.544 | T=0.456 |
1000Genomes | American | Sub | 694 | G=0.770 | T=0.230 |
1000Genomes | East Asian | Sub | 1008 | G=0.868 | T=0.132 |
1000Genomes | Europe | Sub | 1006 | G=0.734 | T=0.266 |
1000Genomes | Global | Study-wide | 5008 | G=0.719 | T=0.281 |
1000Genomes | South Asian | Sub | 978 | G=0.750 | T=0.250 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.739 | T=0.261 |
The Genome Aggregation Database | African | Sub | 8710 | G=0.576 | T=0.424 |
The Genome Aggregation Database | American | Sub | 838 | G=0.790 | T=0.21, |
The Genome Aggregation Database | East Asian | Sub | 1620 | G=0.848 | T=0.152 |
The Genome Aggregation Database | Europe | Sub | 18480 | G=0.728 | T=0.271 |
The Genome Aggregation Database | Global | Study-wide | 29948 | G=0.692 | T=0.307 |
The Genome Aggregation Database | Other | Sub | 300 | G=0.750 | T=0.25, |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.662 | T=0.337 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.716 | T=0.284 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs10928122 | 0.000663 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr2 | 47785333 | 47785484 | E067 | -34488 |
chr2 | 47785583 | 47786154 | E067 | -33818 |
chr2 | 47786278 | 47786437 | E067 | -33535 |
chr2 | 47844297 | 47844875 | E067 | 24325 |
chr2 | 47844886 | 47845021 | E067 | 24914 |
chr2 | 47848098 | 47848175 | E067 | 28126 |
chr2 | 47844297 | 47844875 | E068 | 24325 |
chr2 | 47785333 | 47785484 | E069 | -34488 |
chr2 | 47785583 | 47786154 | E069 | -33818 |
chr2 | 47843523 | 47844133 | E069 | 23551 |
chr2 | 47844297 | 47844875 | E069 | 24325 |
chr2 | 47844886 | 47845021 | E069 | 24914 |
chr2 | 47845193 | 47845243 | E069 | 25221 |
chr2 | 47848098 | 47848175 | E069 | 28126 |
chr2 | 47784729 | 47784856 | E070 | -35116 |
chr2 | 47785333 | 47785484 | E070 | -34488 |
chr2 | 47785583 | 47786154 | E070 | -33818 |
chr2 | 47786278 | 47786437 | E070 | -33535 |
chr2 | 47786544 | 47786655 | E070 | -33317 |
chr2 | 47868666 | 47868724 | E070 | 48694 |
chr2 | 47785333 | 47785484 | E071 | -34488 |
chr2 | 47785583 | 47786154 | E071 | -33818 |
chr2 | 47786278 | 47786437 | E071 | -33535 |
chr2 | 47786544 | 47786655 | E071 | -33317 |
chr2 | 47795437 | 47795914 | E071 | -24058 |
chr2 | 47843523 | 47844133 | E071 | 23551 |
chr2 | 47844297 | 47844875 | E071 | 24325 |
chr2 | 47844886 | 47845021 | E071 | 24914 |
chr2 | 47845193 | 47845243 | E071 | 25221 |
chr2 | 47845287 | 47845361 | E071 | 25315 |
chr2 | 47848098 | 47848175 | E071 | 28126 |
chr2 | 47784729 | 47784856 | E072 | -35116 |
chr2 | 47785333 | 47785484 | E072 | -34488 |
chr2 | 47785583 | 47786154 | E072 | -33818 |
chr2 | 47789179 | 47789356 | E072 | -30616 |
chr2 | 47843523 | 47844133 | E072 | 23551 |
chr2 | 47844297 | 47844875 | E072 | 24325 |
chr2 | 47844886 | 47845021 | E072 | 24914 |
chr2 | 47845193 | 47845243 | E072 | 25221 |
chr2 | 47845287 | 47845361 | E072 | 25315 |
chr2 | 47785333 | 47785484 | E073 | -34488 |
chr2 | 47785583 | 47786154 | E073 | -33818 |
chr2 | 47786278 | 47786437 | E073 | -33535 |
chr2 | 47843523 | 47844133 | E074 | 23551 |
chr2 | 47844297 | 47844875 | E074 | 24325 |
chr2 | 47844886 | 47845021 | E074 | 24914 |
chr2 | 47845193 | 47845243 | E074 | 25221 |
chr2 | 47845287 | 47845361 | E074 | 25315 |
chr2 | 47780359 | 47780459 | E081 | -39513 |
chr2 | 47784729 | 47784856 | E081 | -35116 |
chr2 | 47785333 | 47785484 | E081 | -34488 |
chr2 | 47785583 | 47786154 | E081 | -33818 |
chr2 | 47786278 | 47786437 | E081 | -33535 |
chr2 | 47786544 | 47786655 | E081 | -33317 |
chr2 | 47793690 | 47793861 | E081 | -26111 |
chr2 | 47795437 | 47795914 | E081 | -24058 |
chr2 | 47795437 | 47795914 | E082 | -24058 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr2 | 47796885 | 47797111 | E067 | -22861 |
chr2 | 47797121 | 47797374 | E067 | -22598 |
chr2 | 47797872 | 47798990 | E067 | -20982 |
chr2 | 47796885 | 47797111 | E068 | -22861 |
chr2 | 47797121 | 47797374 | E068 | -22598 |
chr2 | 47797872 | 47798990 | E068 | -20982 |
chr2 | 47796885 | 47797111 | E069 | -22861 |
chr2 | 47797121 | 47797374 | E069 | -22598 |
chr2 | 47797872 | 47798990 | E069 | -20982 |
chr2 | 47797121 | 47797374 | E071 | -22598 |
chr2 | 47797872 | 47798990 | E071 | -20982 |
chr2 | 47797121 | 47797374 | E072 | -22598 |
chr2 | 47797872 | 47798990 | E072 | -20982 |
chr2 | 47796885 | 47797111 | E073 | -22861 |
chr2 | 47797121 | 47797374 | E073 | -22598 |
chr2 | 47797872 | 47798990 | E073 | -20982 |
chr2 | 47797121 | 47797374 | E074 | -22598 |
chr2 | 47797872 | 47798990 | E074 | -20982 |
chr2 | 47796885 | 47797111 | E082 | -22861 |
chr2 | 47797121 | 47797374 | E082 | -22598 |