rs10935068

Homo sapiens
T>A
None
Check p-value
SNV (Single Nucleotide Variation)
T==0399 (11756/29436,GnomAD)
T==0417 (12166/29118,TOPMED)
T==0307 (1538/5008,1000G)
T==0349 (1346/3854,ALSPAC)
T==0381 (1414/3708,TWINSUK)
chr3:133543963 (GRCh38.p7) (3q22.1)
AD
GWASdb2
1   publication(s)
See rs on genome
26 Enhancers around
12 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.133543963T>A
GRCh37.p13 chr 3NC_000003.11:g.133262807T>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.520A=0.480
1000GenomesAmericanSub694T=0.300A=0.700
1000GenomesEast AsianSub1008T=0.133A=0.867
1000GenomesEuropeSub1006T=0.324A=0.676
1000GenomesGlobalStudy-wide5008T=0.307A=0.693
1000GenomesSouth AsianSub978T=0.190A=0.810
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.349A=0.651
The Genome Aggregation DatabaseAfricanSub8614T=0.497A=0.503
The Genome Aggregation DatabaseAmericanSub832T=0.240A=0.760
The Genome Aggregation DatabaseEast AsianSub1596T=0.125A=0.875
The Genome Aggregation DatabaseEuropeSub18092T=0.383A=0.616
The Genome Aggregation DatabaseGlobalStudy-wide29436T=0.399A=0.600
The Genome Aggregation DatabaseOtherSub302T=0.450A=0.550
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.417A=0.582
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.381A=0.619
PMID Title Author Journal
21665994Genome-wide association study identifies two loci strongly affecting transferrin glycosylation.Kutalik ZHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs109350684.61E-07alcohol consumption21665994

eQTL of rs10935068 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10935068 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3133254911133255817E067-6990
chr3133297382133297726E06734575
chr3133254911133255817E068-6990
chr3133254911133255817E069-6990
chr3133296654133296726E06933847
chr3133296755133296862E06933948
chr3133297034133297084E06934227
chr3133297382133297726E06934575
chr3133254911133255817E070-6990
chr3133297382133297726E07034575
chr3133297382133297726E07134575
chr3133289963133290140E07227156
chr3133297382133297726E07234575
chr3133296654133296726E07333847
chr3133296755133296862E07333948
chr3133297034133297084E07334227
chr3133297382133297726E07334575
chr3133254911133255817E074-6990
chr3133296654133296726E07433847
chr3133296755133296862E07433948
chr3133297034133297084E07434227
chr3133297382133297726E07434575
chr3133296755133296862E08133948
chr3133297034133297084E08134227
chr3133297382133297726E08134575
chr3133297382133297726E08234575










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr3133291220133294288E06728413
chr3133291220133294288E06828413
chr3133291220133294288E06928413
chr3133291220133294288E07028413
chr3133294433133294485E07031626
chr3133291220133294288E07128413
chr3133294433133294485E07131626
chr3133291220133294288E07228413
chr3133291220133294288E07328413
chr3133291220133294288E07428413
chr3133291220133294288E08228413
chr3133294433133294485E08231626