SNP Detail Info-rs10936425

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

LINC01324 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0132 (3965/29918,GnomAD)
G=0169 (4929/29118,TOPMED)
G=0142 (712/5008,1000G)
G=0104 (400/3854,ALSPAC)
G=0107 (395/3708,TWINSUK)

Position: chr3:164816238 (GRCh38.p7) (3q26.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 3	NC_000003.12:g.164816238A>G
GRCh37.p13 chr 3	NC_000003.11:g.164534026A>G

Molecule type	Change	Amino acid[Codon]	SO Term
LINC01324 transcript	NR_126405.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.745	G=0.255
1000Genomes	American	Sub	694	A=0.920	G=0.080
1000Genomes	East Asian	Sub	1008	A=0.905	G=0.095
1000Genomes	Europe	Sub	1006	A=0.906	G=0.094
1000Genomes	Global	Study-wide	5008	A=0.858	G=0.142
1000Genomes	South Asian	Sub	978	A=0.870	G=0.130
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.896	G=0.104
The Genome Aggregation Database	African	Sub	8678	A=0.758	G=0.242
The Genome Aggregation Database	American	Sub	838	A=0.940	G=0.060
The Genome Aggregation Database	East Asian	Sub	1614	A=0.898	G=0.102
The Genome Aggregation Database	Europe	Sub	18488	A=0.912	G=0.087
The Genome Aggregation Database	Global	Study-wide	29918	A=0.867	G=0.132
The Genome Aggregation Database	Other	Sub	300	A=0.910	G=0.090
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.830	G=0.169
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.893	G=0.107

PMID	Title	Author	Journal
24962325	Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.	Kapoor M	Drug Alcohol Depend

SNP ID	p-value	Traits	Study
rs10936425	6.06E-08	alcohol dependence (age at onset)	24962325

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs10936425