SNP Detail Info-rs10940057

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0150 (4510/29910,GnomAD)
G=0147 (4297/29118,TOPMED)
G=0177 (887/5008,1000G)
G=0143 (552/3854,ALSPAC)
G=0139 (514/3708,TWINSUK)

Position: chr5:66236339 (GRCh38.p7) (5q12.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 5	NC_000005.10:g.66236339A>G
GRCh37.p13 chr 5	NC_000005.9:g.65532167A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.840	G=0.160
1000Genomes	American	Sub	694	A=0.880	G=0.120
1000Genomes	East Asian	Sub	1008	A=0.807	G=0.193
1000Genomes	Europe	Sub	1006	A=0.873	G=0.127
1000Genomes	Global	Study-wide	5008	A=0.823	G=0.177
1000Genomes	South Asian	Sub	978	A=0.730	G=0.270
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.857	G=0.143
The Genome Aggregation Database	African	Sub	8700	A=0.839	G=0.161
The Genome Aggregation Database	American	Sub	832	A=0.860	G=0.140
The Genome Aggregation Database	East Asian	Sub	1614	A=0.789	G=0.211
The Genome Aggregation Database	Europe	Sub	18464	A=0.859	G=0.141
The Genome Aggregation Database	Global	Study-wide	29910	A=0.849	G=0.150
The Genome Aggregation Database	Other	Sub	300	A=0.830	G=0.170
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.852	G=0.147
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.861	G=0.139

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs10940057	0.000178	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs10940057