SNP Detail Info-rs10972978

Sequence Name	Change(s)
GRCh38.p7 chr 9	NC_000009.12:g.36576850A>G
GRCh37.p13 chr 9	NC_000009.11:g.36576847A>G

Molecule type	Change	Amino acid[Codon]	SO Term
MELK transcript variant 2	NM_001256685.1:c.	N/A	Intron Variant
MELK transcript variant 3	NM_001256687.1:c.	N/A	Intron Variant
MELK transcript variant 4	NM_001256688.1:c.	N/A	Intron Variant
MELK transcript variant 5	NM_001256689.1:c.	N/A	Intron Variant
MELK transcript variant 6	NM_001256690.1:c.	N/A	Intron Variant
MELK transcript variant 7	NM_001256691.1:c.	N/A	Intron Variant
MELK transcript variant 8	NM_001256692.1:c.	N/A	Intron Variant
MELK transcript variant 9	NM_001256693.1:c.	N/A	Intron Variant
MELK transcript variant 1	NM_014791.3:c.	N/A	Intron Variant
MELK transcript variant 10	NR_046337.1:n.	N/A	Intron Variant
MELK transcript variant X1	XM_011518076.2:c.	N/A	Intron Variant
MELK transcript variant X2	XM_011518077.1:c.	N/A	Intron Variant
MELK transcript variant X3	XM_011518078.2:c.	N/A	Intron Variant
MELK transcript variant X5	XM_011518080.1:c.	N/A	Intron Variant
MELK transcript variant X7	XM_011518081.2:c.	N/A	Intron Variant
MELK transcript variant X6	XM_011518082.2:c.	N/A	Intron Variant
MELK transcript variant X8	XM_011518083.2:c.	N/A	Intron Variant
MELK transcript variant X10	XM_011518085.1:c.	N/A	Intron Variant
MELK transcript variant X11	XM_011518086.2:c.	N/A	Intron Variant
MELK transcript variant X4	XM_011518079.1:c.	N/A	Genic Upstream Transcript Variant
MELK transcript variant X9	XM_011518084.2:c.	N/A	Genic Upstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.745	G=0.255
1000Genomes	American	Sub	694	A=0.910	G=0.090
1000Genomes	East Asian	Sub	1008	A=0.886	G=0.114
1000Genomes	Europe	Sub	1006	A=0.891	G=0.109
1000Genomes	Global	Study-wide	5008	A=0.838	G=0.162
1000Genomes	South Asian	Sub	978	A=0.810	G=0.190
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.895	G=0.105
The Genome Aggregation Database	African	Sub	8708	A=0.762	G=0.238
The Genome Aggregation Database	American	Sub	834	A=0.930	G=0.070
The Genome Aggregation Database	East Asian	Sub	1616	A=0.905	G=0.095
The Genome Aggregation Database	Europe	Sub	18476	A=0.888	G=0.111
The Genome Aggregation Database	Global	Study-wide	29934	A=0.853	G=0.146
The Genome Aggregation Database	Other	Sub	300	A=0.890	G=0.110
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.835	G=0.164
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.897	G=0.103

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs10972978	0.000325	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr9	36566572	36566709	E067	-10138
chr9	36566726	36567223	E067	-9624
chr9	36567448	36567550	E067	-9297
chr9	36566353	36566403	E068	-10444
chr9	36566572	36566709	E068	-10138
chr9	36566726	36567223	E068	-9624
chr9	36567448	36567550	E068	-9297
chr9	36566572	36566709	E069	-10138
chr9	36566726	36567223	E069	-9624
chr9	36567448	36567550	E069	-9297
chr9	36566353	36566403	E071	-10444
chr9	36566572	36566709	E071	-10138
chr9	36566726	36567223	E071	-9624
chr9	36567448	36567550	E071	-9297
chr9	36567691	36567771	E071	-9076
chr9	36624870	36625666	E071	48023
chr9	36566726	36567223	E072	-9624
chr9	36567448	36567550	E072	-9297
chr9	36566726	36567223	E073	-9624
chr9	36567448	36567550	E073	-9297
chr9	36624357	36624766	E073	47510
chr9	36624870	36625666	E073	48023
chr9	36555738	36556172	E074	-20675
chr9	36566353	36566403	E074	-10444
chr9	36566572	36566709	E074	-10138
chr9	36566726	36567223	E074	-9624
chr9	36567448	36567550	E074	-9297

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr9	36572350	36573530	E067	-3317
chr9	36572350	36573530	E068	-3317
chr9	36571978	36572250	E069	-4597
chr9	36572350	36573530	E069	-3317
chr9	36572350	36573530	E070	-3317
chr9	36572350	36573530	E071	-3317
chr9	36571978	36572250	E072	-4597
chr9	36572350	36573530	E072	-3317
chr9	36571978	36572250	E073	-4597
chr9	36572350	36573530	E073	-3317
chr9	36572350	36573530	E074	-3317
chr9	36572350	36573530	E081	-3317
chr9	36571978	36572250	E082	-4597
chr9	36572350	36573530	E082	-3317

rs10972978