| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 9 | NC_000009.12:g.107949884G>A |
| GRCh37.p13 chr 9 | NC_000009.11:g.110712165G>A |
| Molecule type | Change | Amino acid[Codon] | SO Term |
|---|---|---|---|
| LOC105376211 transcript | XR_930234.1:n. | N/A | Upstream Transcript Variant |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | G=0.775 | A=0.225 |
| 1000Genomes | American | Sub | 694 | G=0.950 | A=0.050 |
| 1000Genomes | East Asian | Sub | 1008 | G=0.915 | A=0.085 |
| 1000Genomes | Europe | Sub | 1006 | G=0.958 | A=0.042 |
| 1000Genomes | Global | Study-wide | 5008 | G=0.880 | A=0.120 |
| 1000Genomes | South Asian | Sub | 978 | G=0.850 | A=0.150 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.962 | A=0.038 |
| The Genome Aggregation Database | African | Sub | 8720 | G=0.802 | A=0.198 |
| The Genome Aggregation Database | American | Sub | 838 | G=0.960 | A=0.040 |
| The Genome Aggregation Database | East Asian | Sub | 1614 | G=0.923 | A=0.077 |
| The Genome Aggregation Database | Europe | Sub | 18488 | G=0.961 | A=0.039 |
| The Genome Aggregation Database | Global | Study-wide | 29962 | G=0.912 | A=0.087 |
| The Genome Aggregation Database | Other | Sub | 302 | G=0.940 | A=0.060 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.888 | A=0.111 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.958 | A=0.042 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs10979126 | 0.000113 | alcohol dependence | 20201924 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr9 | 110666636 | 110666802 | E067 | -45363 |
| chr9 | 110667075 | 110667135 | E067 | -45030 |
| chr9 | 110667206 | 110667280 | E067 | -44885 |
| chr9 | 110667357 | 110667483 | E067 | -44682 |
| chr9 | 110667648 | 110667981 | E067 | -44184 |
| chr9 | 110668045 | 110668159 | E067 | -44006 |
| chr9 | 110668283 | 110668377 | E067 | -43788 |
| chr9 | 110668469 | 110668716 | E067 | -43449 |
| chr9 | 110668762 | 110668845 | E067 | -43320 |
| chr9 | 110669621 | 110669798 | E067 | -42367 |
| chr9 | 110669861 | 110670024 | E067 | -42141 |
| chr9 | 110670164 | 110670315 | E067 | -41850 |
| chr9 | 110670327 | 110670541 | E067 | -41624 |
| chr9 | 110679654 | 110679729 | E067 | -32436 |
| chr9 | 110679774 | 110679824 | E067 | -32341 |
| chr9 | 110679985 | 110680039 | E067 | -32126 |
| chr9 | 110680249 | 110680299 | E067 | -31866 |
| chr9 | 110680745 | 110680872 | E067 | -31293 |
| chr9 | 110680906 | 110680968 | E067 | -31197 |
| chr9 | 110681541 | 110682103 | E067 | -30062 |
| chr9 | 110682179 | 110682222 | E067 | -29943 |
| chr9 | 110667206 | 110667280 | E068 | -44885 |
| chr9 | 110667357 | 110667483 | E068 | -44682 |
| chr9 | 110667648 | 110667981 | E068 | -44184 |
| chr9 | 110668045 | 110668159 | E068 | -44006 |
| chr9 | 110668283 | 110668377 | E068 | -43788 |
| chr9 | 110668469 | 110668716 | E068 | -43449 |
| chr9 | 110668762 | 110668845 | E068 | -43320 |
| chr9 | 110669621 | 110669798 | E068 | -42367 |
| chr9 | 110669861 | 110670024 | E068 | -42141 |
| chr9 | 110679985 | 110680039 | E068 | -32126 |
| chr9 | 110680249 | 110680299 | E068 | -31866 |
| chr9 | 110680745 | 110680872 | E068 | -31293 |
| chr9 | 110680906 | 110680968 | E068 | -31197 |
| chr9 | 110682179 | 110682222 | E068 | -29943 |
| chr9 | 110667075 | 110667135 | E069 | -45030 |
| chr9 | 110667206 | 110667280 | E069 | -44885 |
| chr9 | 110667357 | 110667483 | E069 | -44682 |
| chr9 | 110667648 | 110667981 | E069 | -44184 |
| chr9 | 110668045 | 110668159 | E069 | -44006 |
| chr9 | 110668283 | 110668377 | E069 | -43788 |
| chr9 | 110668469 | 110668716 | E069 | -43449 |
| chr9 | 110668762 | 110668845 | E069 | -43320 |
| chr9 | 110669621 | 110669798 | E069 | -42367 |
| chr9 | 110669861 | 110670024 | E069 | -42141 |
| chr9 | 110670164 | 110670315 | E069 | -41850 |
| chr9 | 110670327 | 110670541 | E069 | -41624 |
| chr9 | 110670842 | 110670892 | E069 | -41273 |
| chr9 | 110679985 | 110680039 | E069 | -32126 |
| chr9 | 110680249 | 110680299 | E069 | -31866 |
| chr9 | 110680745 | 110680872 | E069 | -31293 |
| chr9 | 110680906 | 110680968 | E069 | -31197 |
| chr9 | 110681541 | 110682103 | E069 | -30062 |
| chr9 | 110682179 | 110682222 | E069 | -29943 |
| chr9 | 110728858 | 110728948 | E069 | 16693 |
| chr9 | 110728966 | 110729358 | E069 | 16801 |
| chr9 | 110729407 | 110729512 | E069 | 17242 |
| chr9 | 110729578 | 110729628 | E069 | 17413 |
| chr9 | 110729897 | 110730050 | E069 | 17732 |
| chr9 | 110730093 | 110730325 | E069 | 17928 |
| chr9 | 110666636 | 110666802 | E070 | -45363 |
| chr9 | 110667075 | 110667135 | E070 | -45030 |
| chr9 | 110667206 | 110667280 | E070 | -44885 |
| chr9 | 110667357 | 110667483 | E070 | -44682 |
| chr9 | 110667648 | 110667981 | E070 | -44184 |
| chr9 | 110668045 | 110668159 | E070 | -44006 |
| chr9 | 110668283 | 110668377 | E070 | -43788 |
| chr9 | 110668469 | 110668716 | E070 | -43449 |
| chr9 | 110680745 | 110680872 | E070 | -31293 |
| chr9 | 110680906 | 110680968 | E070 | -31197 |
| chr9 | 110691360 | 110691559 | E070 | -20606 |
| chr9 | 110691656 | 110692188 | E070 | -19977 |
| chr9 | 110729897 | 110730050 | E070 | 17732 |
| chr9 | 110730093 | 110730325 | E070 | 17928 |
| chr9 | 110730341 | 110730426 | E070 | 18176 |
| chr9 | 110730437 | 110730491 | E070 | 18272 |
| chr9 | 110730620 | 110730683 | E070 | 18455 |
| chr9 | 110730722 | 110730875 | E070 | 18557 |
| chr9 | 110731011 | 110731134 | E070 | 18846 |
| chr9 | 110731494 | 110731614 | E070 | 19329 |
| chr9 | 110731643 | 110731787 | E070 | 19478 |
| chr9 | 110667075 | 110667135 | E071 | -45030 |
| chr9 | 110667206 | 110667280 | E071 | -44885 |
| chr9 | 110667357 | 110667483 | E071 | -44682 |
| chr9 | 110667648 | 110667981 | E071 | -44184 |
| chr9 | 110668045 | 110668159 | E071 | -44006 |
| chr9 | 110668283 | 110668377 | E071 | -43788 |
| chr9 | 110668469 | 110668716 | E071 | -43449 |
| chr9 | 110668762 | 110668845 | E071 | -43320 |
| chr9 | 110669621 | 110669798 | E071 | -42367 |
| chr9 | 110669861 | 110670024 | E071 | -42141 |
| chr9 | 110670164 | 110670315 | E071 | -41850 |
| chr9 | 110670327 | 110670541 | E071 | -41624 |
| chr9 | 110670842 | 110670892 | E071 | -41273 |
| chr9 | 110680249 | 110680299 | E071 | -31866 |
| chr9 | 110680745 | 110680872 | E071 | -31293 |
| chr9 | 110680906 | 110680968 | E071 | -31197 |
| chr9 | 110682179 | 110682222 | E071 | -29943 |
| chr9 | 110728858 | 110728948 | E071 | 16693 |
| chr9 | 110728966 | 110729358 | E071 | 16801 |
| chr9 | 110730093 | 110730325 | E071 | 17928 |
| chr9 | 110667206 | 110667280 | E072 | -44885 |
| chr9 | 110667357 | 110667483 | E072 | -44682 |
| chr9 | 110667648 | 110667981 | E072 | -44184 |
| chr9 | 110668045 | 110668159 | E072 | -44006 |
| chr9 | 110668283 | 110668377 | E072 | -43788 |
| chr9 | 110668469 | 110668716 | E072 | -43449 |
| chr9 | 110668762 | 110668845 | E072 | -43320 |
| chr9 | 110669621 | 110669798 | E072 | -42367 |
| chr9 | 110669861 | 110670024 | E072 | -42141 |
| chr9 | 110670164 | 110670315 | E072 | -41850 |
| chr9 | 110670327 | 110670541 | E072 | -41624 |
| chr9 | 110670842 | 110670892 | E072 | -41273 |
| chr9 | 110679774 | 110679824 | E072 | -32341 |
| chr9 | 110679985 | 110680039 | E072 | -32126 |
| chr9 | 110680249 | 110680299 | E072 | -31866 |
| chr9 | 110680745 | 110680872 | E072 | -31293 |
| chr9 | 110680906 | 110680968 | E072 | -31197 |
| chr9 | 110681175 | 110681458 | E072 | -30707 |
| chr9 | 110681541 | 110682103 | E072 | -30062 |
| chr9 | 110667357 | 110667483 | E073 | -44682 |
| chr9 | 110667648 | 110667981 | E073 | -44184 |
| chr9 | 110668045 | 110668159 | E073 | -44006 |
| chr9 | 110668283 | 110668377 | E073 | -43788 |
| chr9 | 110681175 | 110681458 | E073 | -30707 |
| chr9 | 110681541 | 110682103 | E073 | -30062 |
| chr9 | 110682179 | 110682222 | E073 | -29943 |
| chr9 | 110667206 | 110667280 | E074 | -44885 |
| chr9 | 110667357 | 110667483 | E074 | -44682 |
| chr9 | 110667648 | 110667981 | E074 | -44184 |
| chr9 | 110668045 | 110668159 | E074 | -44006 |
| chr9 | 110668283 | 110668377 | E074 | -43788 |
| chr9 | 110668469 | 110668716 | E074 | -43449 |
| chr9 | 110668762 | 110668845 | E074 | -43320 |
| chr9 | 110669621 | 110669798 | E074 | -42367 |
| chr9 | 110669861 | 110670024 | E074 | -42141 |
| chr9 | 110670842 | 110670892 | E074 | -41273 |
| chr9 | 110679985 | 110680039 | E074 | -32126 |
| chr9 | 110680249 | 110680299 | E074 | -31866 |
| chr9 | 110680745 | 110680872 | E074 | -31293 |
| chr9 | 110680906 | 110680968 | E074 | -31197 |
| chr9 | 110682179 | 110682222 | E074 | -29943 |
| chr9 | 110728858 | 110728948 | E074 | 16693 |
| chr9 | 110728966 | 110729358 | E074 | 16801 |
| chr9 | 110730341 | 110730426 | E082 | 18176 |
| chr9 | 110730437 | 110730491 | E082 | 18272 |
| chr9 | 110730620 | 110730683 | E082 | 18455 |
| chr9 | 110730722 | 110730875 | E082 | 18557 |
| chr9 | 110731011 | 110731134 | E082 | 18846 |