rs10982769

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0204 (6127/29896,GnomAD)
C=0185 (5414/29118,TOPMED)
C=0159 (797/5008,1000G)
C=0315 (1213/3854,ALSPAC)
C=0294 (1090/3708,TWINSUK)
chr9:115492709 (GRCh38.p7) (9q33.1)
AD
GWASdb2
1   publication(s)
See rs on genome
13 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.115492709T>C
GRCh37.p13 chr 9NC_000009.11:g.118254988T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.977C=0.023
1000GenomesAmericanSub694T=0.710C=0.290
1000GenomesEast AsianSub1008T=0.932C=0.068
1000GenomesEuropeSub1006T=0.730C=0.270
1000GenomesGlobalStudy-wide5008T=0.841C=0.159
1000GenomesSouth AsianSub978T=0.770C=0.230
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.685C=0.315
The Genome Aggregation DatabaseAfricanSub8716T=0.941C=0.059
The Genome Aggregation DatabaseAmericanSub838T=0.690C=0.310
The Genome Aggregation DatabaseEast AsianSub1612T=0.919C=0.081
The Genome Aggregation DatabaseEuropeSub18430T=0.721C=0.278
The Genome Aggregation DatabaseGlobalStudy-wide29896T=0.795C=0.204
The Genome Aggregation DatabaseOtherSub300T=0.700C=0.300
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.814C=0.185
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.706C=0.294
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs109827690.00029alcohol dependence20201924

eQTL of rs10982769 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs10982769 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr9118275180118275266E06820192
chr9118275180118275266E06920192
chr9118275321118275386E06920333
chr9118275503118275680E06920515
chr9118206387118208414E070-46574
chr9118275180118275266E07120192
chr9118275321118275386E07120333
chr9118275503118275680E07120515
chr9118275180118275266E07420192
chr9118275321118275386E07420333
chr9118275503118275680E07420515
chr9118276306118276356E07421318
chr9118276406118276552E07421418