rs11013643

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0106 (3188/29856,GnomAD)
G=0141 (4111/29118,TOPMED)
G=0148 (741/5008,1000G)
G=0047 (181/3854,ALSPAC)
G=0046 (170/3708,TWINSUK)
chr10:23679454 (GRCh38.p7) (10p12.2)
AD
GWASdb2
1   publication(s)
See rs on genome
4 Enhancers around
25 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.23679454A>G
GRCh37.p13 chr 10NC_000010.10:g.23968383A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.722G=0.278
1000GenomesAmericanSub694A=0.870G=0.130
1000GenomesEast AsianSub1008A=0.961G=0.039
1000GenomesEuropeSub1006A=0.944G=0.056
1000GenomesGlobalStudy-wide5008A=0.852G=0.148
1000GenomesSouth AsianSub978A=0.810G=0.190
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.953G=0.047
The Genome Aggregation DatabaseAfricanSub8652A=0.762G=0.238
The Genome Aggregation DatabaseAmericanSub830A=0.860G=0.140
The Genome Aggregation DatabaseEast AsianSub1602A=0.944G=0.056
The Genome Aggregation DatabaseEuropeSub18470A=0.951G=0.048
The Genome Aggregation DatabaseGlobalStudy-wide29856A=0.893G=0.106
The Genome Aggregation DatabaseOtherSub302A=0.950G=0.050
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.858G=0.141
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.954G=0.046
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs110136430.000257alcohol consumption23743675

eQTL of rs11013643 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11013643 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr102399188223992300E06723499
chr102400783124008246E06939448
chr102399188223992300E07123499
chr102399188223992300E07223499




Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr102398238623984302E06714003
chr102398472923984779E06716346
chr102398490123985089E06716518
chr102398512123985261E06716738
chr102398238623984302E06814003
chr102398446523984549E06816082
chr102398472923984779E06816346
chr102398490123985089E06816518
chr102398238623984302E06914003
chr102398472923984779E06916346
chr102398490123985089E06916518
chr102398512123985261E06916738
chr102398238623984302E07214003
chr102398446523984549E07216082
chr102398472923984779E07216346
chr102398490123985089E07216518
chr102398512123985261E07216738
chr102398238623984302E07314003
chr102398446523984549E07316082
chr102398472923984779E07316346
chr102398490123985089E07316518
chr102398512123985261E07316738
chr102398472923984779E08216346
chr102398490123985089E08216518
chr102398512123985261E08216738