SNP Detail Info-rs11013645

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0106 (3200/29944,GnomAD)
G=0141 (4114/29118,TOPMED)
G=0148 (742/5008,1000G)
G=0047 (181/3854,ALSPAC)
G=0046 (170/3708,TWINSUK)

Position: chr10:23680279 (GRCh38.p7) (10p12.2)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 4 Enhancers around

Promoter: 25 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 10	NC_000010.11:g.23680279A>G
GRCh37.p13 chr 10	NC_000010.10:g.23969208A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.722	G=0.278
1000Genomes	American	Sub	694	A=0.870	G=0.130
1000Genomes	East Asian	Sub	1008	A=0.961	G=0.039
1000Genomes	Europe	Sub	1006	A=0.944	G=0.056
1000Genomes	Global	Study-wide	5008	A=0.852	G=0.148
1000Genomes	South Asian	Sub	978	A=0.810	G=0.190
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.953	G=0.047
The Genome Aggregation Database	African	Sub	8698	A=0.761	G=0.239
The Genome Aggregation Database	American	Sub	834	A=0.860	G=0.140
The Genome Aggregation Database	East Asian	Sub	1618	A=0.944	G=0.056
The Genome Aggregation Database	Europe	Sub	18492	A=0.951	G=0.048
The Genome Aggregation Database	Global	Study-wide	29944	A=0.893	G=0.106
The Genome Aggregation Database	Other	Sub	302	A=0.950	G=0.050
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.858	G=0.141
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.954	G=0.046

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs11013645	0.000257	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr10	23991882	23992300	E067	22674
chr10	24007831	24008246	E069	38623
chr10	23991882	23992300	E071	22674
chr10	23991882	23992300	E072	22674

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr10	23982386	23984302	E067	13178
chr10	23984729	23984779	E067	15521
chr10	23984901	23985089	E067	15693
chr10	23985121	23985261	E067	15913
chr10	23982386	23984302	E068	13178
chr10	23984465	23984549	E068	15257
chr10	23984729	23984779	E068	15521
chr10	23984901	23985089	E068	15693
chr10	23982386	23984302	E069	13178
chr10	23984729	23984779	E069	15521
chr10	23984901	23985089	E069	15693
chr10	23985121	23985261	E069	15913
chr10	23982386	23984302	E072	13178
chr10	23984465	23984549	E072	15257
chr10	23984729	23984779	E072	15521
chr10	23984901	23985089	E072	15693
chr10	23985121	23985261	E072	15913
chr10	23982386	23984302	E073	13178
chr10	23984465	23984549	E073	15257
chr10	23984729	23984779	E073	15521
chr10	23984901	23985089	E073	15693
chr10	23985121	23985261	E073	15913
chr10	23984729	23984779	E082	15521
chr10	23984901	23985089	E082	15693
chr10	23985121	23985261	E082	15913

rs11013645