Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 11 | NC_000011.10:g.14321215G>A |
GRCh37.p13 chr 11 fix patch HG256_PATCH | NW_003871075.1:g.379299G>A |
RRAS2 RefSeqGene | NG_017058.1:g.48292C>T |
GRCh37.p13 chr 11 | NC_000011.9:g.14342761G>A |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
RRAS2 transcript variant 2 | NM_001102669.2:c. | N/A | Intron Variant |
RRAS2 transcript variant 3 | NM_001177314.1:c. | N/A | Intron Variant |
RRAS2 transcript variant 4 | NM_001177315.1:c. | N/A | Intron Variant |
RRAS2 transcript variant 1 | NM_012250.5:c. | N/A | Intron Variant |
RRAS2 transcript variant X1 | XM_017017363.1:c. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.799 | A=0.201 |
1000Genomes | American | Sub | 694 | G=0.910 | A=0.090 |
1000Genomes | East Asian | Sub | 1008 | G=0.809 | A=0.191 |
1000Genomes | Europe | Sub | 1006 | G=0.875 | A=0.125 |
1000Genomes | Global | Study-wide | 5008 | G=0.851 | A=0.149 |
1000Genomes | South Asian | Sub | 978 | G=0.900 | A=0.100 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.890 | A=0.110 |
The Genome Aggregation Database | African | Sub | 8658 | G=0.833 | A=0.167 |
The Genome Aggregation Database | American | Sub | 812 | G=0.920 | A=0.080 |
The Genome Aggregation Database | East Asian | Sub | 1620 | G=0.812 | A=0.188 |
The Genome Aggregation Database | Europe | Sub | 18296 | G=0.850 | A=0.149 |
The Genome Aggregation Database | Global | Study-wide | 29688 | G=0.845 | A=0.154 |
The Genome Aggregation Database | Other | Sub | 302 | G=0.870 | A=0.130 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.871 | A=0.128 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.889 | A=0.111 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs11023186 | 0.0000966 | alcoholism | pha002891 |
rs11023186 | 0.0000966 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr11 | 350483 | 351410 | E067 | -27889 |
chr11 | 357716 | 357804 | E067 | -21495 |
chr11 | 357812 | 357955 | E067 | -21344 |
chr11 | 371159 | 371508 | E067 | -7791 |
chr11 | 373524 | 373653 | E067 | -5646 |
chr11 | 373706 | 373842 | E067 | -5457 |
chr11 | 373933 | 374381 | E067 | -4918 |
chr11 | 374494 | 374544 | E067 | -4755 |
chr11 | 335536 | 337159 | E068 | -42140 |
chr11 | 352587 | 352772 | E068 | -26527 |
chr11 | 352835 | 354238 | E068 | -25061 |
chr11 | 371159 | 371508 | E068 | -7791 |
chr11 | 371557 | 371756 | E068 | -7543 |
chr11 | 371764 | 372056 | E068 | -7243 |
chr11 | 373382 | 373446 | E068 | -5853 |
chr11 | 373524 | 373653 | E068 | -5646 |
chr11 | 373706 | 373842 | E068 | -5457 |
chr11 | 373933 | 374381 | E068 | -4918 |
chr11 | 334067 | 334975 | E069 | -44324 |
chr11 | 335536 | 337159 | E069 | -42140 |
chr11 | 350483 | 351410 | E069 | -27889 |
chr11 | 352587 | 352772 | E069 | -26527 |
chr11 | 352835 | 354238 | E069 | -25061 |
chr11 | 371159 | 371508 | E069 | -7791 |
chr11 | 371557 | 371756 | E069 | -7543 |
chr11 | 371764 | 372056 | E069 | -7243 |
chr11 | 372084 | 372449 | E069 | -6850 |
chr11 | 372467 | 372517 | E069 | -6782 |
chr11 | 372589 | 372629 | E069 | -6670 |
chr11 | 372705 | 372755 | E069 | -6544 |
chr11 | 372868 | 372918 | E069 | -6381 |
chr11 | 373092 | 373155 | E069 | -6144 |
chr11 | 373382 | 373446 | E069 | -5853 |
chr11 | 373524 | 373653 | E069 | -5646 |
chr11 | 373706 | 373842 | E069 | -5457 |
chr11 | 373933 | 374381 | E069 | -4918 |
chr11 | 375224 | 375389 | E069 | -3910 |
chr11 | 375416 | 375564 | E069 | -3735 |
chr11 | 405412 | 405591 | E069 | 26113 |
chr11 | 387566 | 387802 | E070 | 8267 |
chr11 | 387882 | 387974 | E070 | 8583 |
chr11 | 388173 | 388259 | E070 | 8874 |
chr11 | 335148 | 335188 | E071 | -44111 |
chr11 | 335250 | 335303 | E071 | -43996 |
chr11 | 335413 | 335497 | E071 | -43802 |
chr11 | 335536 | 337159 | E071 | -42140 |
chr11 | 337609 | 337659 | E071 | -41640 |
chr11 | 349879 | 350005 | E071 | -29294 |
chr11 | 350175 | 350272 | E071 | -29027 |
chr11 | 350483 | 351410 | E071 | -27889 |
chr11 | 352587 | 352772 | E071 | -26527 |
chr11 | 352835 | 354238 | E071 | -25061 |
chr11 | 371159 | 371508 | E071 | -7791 |
chr11 | 371557 | 371756 | E071 | -7543 |
chr11 | 371764 | 372056 | E071 | -7243 |
chr11 | 372084 | 372449 | E071 | -6850 |
chr11 | 373524 | 373653 | E071 | -5646 |
chr11 | 373706 | 373842 | E071 | -5457 |
chr11 | 335536 | 337159 | E072 | -42140 |
chr11 | 349623 | 349683 | E072 | -29616 |
chr11 | 349879 | 350005 | E072 | -29294 |
chr11 | 350175 | 350272 | E072 | -29027 |
chr11 | 352835 | 354238 | E072 | -25061 |
chr11 | 371159 | 371508 | E072 | -7791 |
chr11 | 371557 | 371756 | E072 | -7543 |
chr11 | 371764 | 372056 | E072 | -7243 |
chr11 | 372084 | 372449 | E072 | -6850 |
chr11 | 373382 | 373446 | E072 | -5853 |
chr11 | 373524 | 373653 | E072 | -5646 |
chr11 | 373706 | 373842 | E072 | -5457 |
chr11 | 375224 | 375389 | E072 | -3910 |
chr11 | 375416 | 375564 | E072 | -3735 |
chr11 | 405211 | 405360 | E072 | 25912 |
chr11 | 405412 | 405591 | E072 | 26113 |
chr11 | 335536 | 337159 | E073 | -42140 |
chr11 | 342185 | 342386 | E073 | -36913 |
chr11 | 342390 | 342745 | E073 | -36554 |
chr11 | 352444 | 352550 | E073 | -26749 |
chr11 | 352587 | 352772 | E073 | -26527 |
chr11 | 352835 | 354238 | E073 | -25061 |
chr11 | 371557 | 371756 | E073 | -7543 |
chr11 | 371764 | 372056 | E073 | -7243 |
chr11 | 372084 | 372449 | E073 | -6850 |
chr11 | 372467 | 372517 | E073 | -6782 |
chr11 | 372589 | 372629 | E073 | -6670 |
chr11 | 372705 | 372755 | E073 | -6544 |
chr11 | 372868 | 372918 | E073 | -6381 |
chr11 | 373092 | 373155 | E073 | -6144 |
chr11 | 373382 | 373446 | E073 | -5853 |
chr11 | 373524 | 373653 | E073 | -5646 |
chr11 | 373706 | 373842 | E073 | -5457 |
chr11 | 373933 | 374381 | E073 | -4918 |
chr11 | 374494 | 374544 | E073 | -4755 |
chr11 | 375416 | 375564 | E073 | -3735 |
chr11 | 375787 | 376003 | E073 | -3296 |
chr11 | 335536 | 337159 | E074 | -42140 |
chr11 | 350483 | 351410 | E074 | -27889 |
chr11 | 352444 | 352550 | E074 | -26749 |
chr11 | 352587 | 352772 | E074 | -26527 |
chr11 | 352835 | 354238 | E074 | -25061 |
chr11 | 373706 | 373842 | E074 | -5457 |
chr11 | 373933 | 374381 | E074 | -4918 |
chr11 | 374494 | 374544 | E074 | -4755 |
chr11 | 371159 | 371508 | E081 | -7791 |
chr11 | 371557 | 371756 | E081 | -7543 |
chr11 | 371764 | 372056 | E081 | -7243 |
chr11 | 372084 | 372449 | E081 | -6850 |
chr11 | 372084 | 372449 | E082 | -6850 |
chr11 | 372467 | 372517 | E082 | -6782 |
chr11 | 372589 | 372629 | E082 | -6670 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr11 | 368932 | 369004 | E067 | -10295 |
chr11 | 370057 | 370956 | E067 | -8343 |
chr11 | 368932 | 369004 | E068 | -10295 |
chr11 | 369769 | 370052 | E068 | -9247 |
chr11 | 370057 | 370956 | E068 | -8343 |
chr11 | 414368 | 418062 | E068 | 35069 |
chr11 | 368932 | 369004 | E069 | -10295 |
chr11 | 369769 | 370052 | E069 | -9247 |
chr11 | 370057 | 370956 | E069 | -8343 |
chr11 | 368932 | 369004 | E070 | -10295 |
chr11 | 369056 | 369084 | E070 | -10215 |
chr11 | 369098 | 369261 | E070 | -10038 |
chr11 | 369300 | 369768 | E070 | -9531 |
chr11 | 369769 | 370052 | E070 | -9247 |
chr11 | 370057 | 370956 | E070 | -8343 |
chr11 | 370057 | 370956 | E071 | -8343 |
chr11 | 368932 | 369004 | E072 | -10295 |
chr11 | 369769 | 370052 | E072 | -9247 |
chr11 | 370057 | 370956 | E072 | -8343 |
chr11 | 368932 | 369004 | E073 | -10295 |
chr11 | 369769 | 370052 | E073 | -9247 |
chr11 | 370057 | 370956 | E073 | -8343 |
chr11 | 368932 | 369004 | E074 | -10295 |
chr11 | 370057 | 370956 | E074 | -8343 |
chr11 | 368932 | 369004 | E081 | -10295 |
chr11 | 368932 | 369004 | E082 | -10295 |
chr11 | 369056 | 369084 | E082 | -10215 |
chr11 | 369098 | 369261 | E082 | -10038 |
chr11 | 369300 | 369768 | E082 | -9531 |
chr11 | 369769 | 370052 | E082 | -9247 |
chr11 | 370057 | 370956 | E082 | -8343 |