rs11033401

Homo sapiens
G>A
LDLRAD3 : Intron Variant
LOC101928510 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0025 (758/29980,GnomAD)
A=0038 (1109/29118,TOPMED)
A=0030 (149/5008,1000G)
A=0000 (1/3854,ALSPAC)
A=0000 (0/3708,TWINSUK)
chr11:36073797 (GRCh38.p7) (11p13)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.36073797G>A
GRCh37.p13 chr 11NC_000011.9:g.36095347G>A

Gene: LDLRAD3, low density lipoprotein receptor class A domain containing 3(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LDLRAD3 transcript variant 2NM_001304263.1:c.N/AIntron Variant
LDLRAD3 transcript variant 3NM_001304264.1:c.N/AIntron Variant
LDLRAD3 transcript variant 1NM_174902.3:c.N/AIntron Variant

Gene: LOC101928510, uncharacterized LOC101928510(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC101928510 transcriptNR_135064.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.892A=0.108
1000GenomesAmericanSub694G=1.000A=0.000
1000GenomesEast AsianSub1008G=1.000A=0.000
1000GenomesEuropeSub1006G=0.998A=0.002
1000GenomesGlobalStudy-wide5008G=0.970A=0.030
1000GenomesSouth AsianSub978G=1.000A=0.000
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=1.000A=0.000
The Genome Aggregation DatabaseAfricanSub8718G=0.914A=0.086
The Genome Aggregation DatabaseAmericanSub838G=1.000A=0.000
The Genome Aggregation DatabaseEast AsianSub1622G=1.000A=0.000
The Genome Aggregation DatabaseEuropeSub18500G=0.999A=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29980G=0.974A=0.025
The Genome Aggregation DatabaseOtherSub302G=1.000A=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.961A=0.038
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=1.000A=0.000
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs110334010.000421alcohol dependence21314694

eQTL of rs11033401 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11033401 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr113605161336052883E067-42464
chr113605294236053041E067-42306
chr113605310136053157E067-42190
chr113605324436053294E067-42053
chr113607528436076200E067-19147
chr113609117436092550E067-2797
chr113609272336092795E067-2552
chr113609279736092852E067-2495
chr113609436636095630E0670
chr113609573436095898E067387
chr113609593536096052E067588
chr113609613936096404E067792
chr113610978136110413E06714434
chr113611969736119895E06724350
chr113611990636120223E06724559
chr113612029536120414E06724948
chr113612046636120797E06725119
chr113612128136121595E06725934
chr113612179936121849E06726452
chr113612630136127260E06730954
chr113612728436127657E06731937
chr113612812136128194E06732774
chr113614184336141914E06746496
chr113614217036142220E06746823
chr113614222336142273E06746876
chr113605161336052883E068-42464
chr113605310136053157E068-42190
chr113605471536055607E068-39740
chr113606823036068408E068-26939
chr113606862836068731E068-26616
chr113606886136068911E068-26436
chr113606893236069251E068-26096
chr113606935136069499E068-25848
chr113606951336069553E068-25794
chr113606958636069630E068-25717
chr113606992636070031E068-25316
chr113607022636070726E068-24621
chr113607151236071592E068-23755
chr113607170436072148E068-23199
chr113607339236073620E068-21727
chr113607365436073792E068-21555
chr113607407836074136E068-21211
chr113607440736074507E068-20840
chr113607459936074661E068-20686
chr113607471136075231E068-20116
chr113607528436076200E068-19147
chr113607666836076928E068-18419
chr113607700836077244E068-18103
chr113607724736077371E068-17976
chr113608324936083374E068-11973
chr113609100236091114E068-4233
chr113609117436092550E068-2797
chr113609272336092795E068-2552
chr113609279736092852E068-2495
chr113609321636093266E068-2081
chr113609327236093335E068-2012
chr113609353636093731E068-1616
chr113609377036093890E068-1457
chr113609392136094275E068-1072
chr113609436636095630E0680
chr113609573436095898E068387
chr113609593536096052E068588
chr113609613936096404E068792
chr113609641536097227E0681068
chr113609727036097378E0681923
chr113610978136110413E06814434
chr113611048336110691E06815136
chr113611072236110840E06815375
chr113611969736119895E06824350
chr113611990636120223E06824559
chr113612029536120414E06824948
chr113612046636120797E06825119
chr113612128136121595E06825934
chr113612630136127260E06830954
chr113612728436127657E06831937
chr113612786136127991E06832514
chr113612799736128069E06832650
chr113612812136128194E06832774
chr113612840836128458E06833061
chr113613058736130656E06835240
chr113613762836138023E06842281
chr113613811336138153E06842766
chr113614274336142920E06847396
chr113614297036143010E06847623
chr113614311436143164E06847767
chr113614318436143308E06847837
chr113605161336052883E069-42464
chr113605294236053041E069-42306
chr113605310136053157E069-42190
chr113605324436053294E069-42053
chr113605828836058403E069-36944
chr113605843536058546E069-36801
chr113605859436058931E069-36416
chr113606352636063616E069-31731
chr113606363336063881E069-31466
chr113606389736064152E069-31195
chr113606893236069251E069-26096
chr113606935136069499E069-25848
chr113606951336069553E069-25794
chr113606958636069630E069-25717
chr113607440736074507E069-20840
chr113607459936074661E069-20686
chr113607471136075231E069-20116
chr113607528436076200E069-19147
chr113609117436092550E069-2797
chr113609272336092795E069-2552
chr113609279736092852E069-2495
chr113609321636093266E069-2081
chr113609327236093335E069-2012
chr113609353636093731E069-1616
chr113609377036093890E069-1457
chr113609392136094275E069-1072
chr113609436636095630E0690
chr113609573436095898E069387
chr113609593536096052E069588
chr113609613936096404E069792
chr113610978136110413E06914434
chr113611048336110691E06915136
chr113611969736119895E06924350
chr113611990636120223E06924559
chr113612029536120414E06924948
chr113612046636120797E06925119
chr113612592636126172E06930579
chr113612630136127260E06930954
chr113612728436127657E06931937
chr113612786136127991E06932514
chr113612799736128069E06932650
chr113613058736130656E06935240
chr113613070636133107E06935359
chr113605310136053157E070-42190
chr113605572036055783E070-39564
chr113605587036055924E070-39423
chr113605755436057730E070-37617
chr113605795136058050E070-37297
chr113605809036058202E070-37145
chr113605828836058403E070-36944
chr113605843536058546E070-36801
chr113605859436058931E070-36416
chr113605925336059310E070-36037
chr113605955836059612E070-35735
chr113605973136059771E070-35576
chr113605995136059991E070-35356
chr113606312636063222E070-32125
chr113606352636063616E070-31731
chr113606363336063881E070-31466
chr113606389736064152E070-31195
chr113606490436064971E070-30376
chr113606504336065087E070-30260
chr113606522136065381E070-29966
chr113606543736065541E070-29806
chr113606586336066089E070-29258
chr113606862836068731E070-26616
chr113606886136068911E070-26436
chr113606893236069251E070-26096
chr113606935136069499E070-25848
chr113606951336069553E070-25794
chr113606958636069630E070-25717
chr113606992636070031E070-25316
chr113607700836077244E070-18103
chr113607724736077371E070-17976
chr113609272336092795E070-2552
chr113609279736092852E070-2495
chr113609321636093266E070-2081
chr113609327236093335E070-2012
chr113609353636093731E070-1616
chr113609377036093890E070-1457
chr113609392136094275E070-1072
chr113609436636095630E0700
chr113609573436095898E070387
chr113609593536096052E070588
chr113609613936096404E070792
chr113611969736119895E07024350
chr113611990636120223E07024559
chr113612029536120414E07024948
chr113612046636120797E07025119
chr113612128136121595E07025934
chr113612179936121849E07026452
chr113612630136127260E07030954
chr113613058736130656E07035240
chr113613070636133107E07035359
chr113614274336142920E07047396
chr113614297036143010E07047623
chr113614311436143164E07047767
chr113614318436143308E07047837
chr113614334436143394E07047997
chr113614352436143683E07048177
chr113614407336144123E07048726
chr113614414836144360E07048801
chr113614443736144602E07049090
chr113605161336052883E071-42464
chr113605294236053041E071-42306
chr113605310136053157E071-42190
chr113605324436053294E071-42053
chr113605755436057730E071-37617
chr113605795136058050E071-37297
chr113605809036058202E071-37145
chr113605828836058403E071-36944
chr113605843536058546E071-36801
chr113605859436058931E071-36416
chr113605925336059310E071-36037
chr113606363336063881E071-31466
chr113606389736064152E071-31195
chr113607151236071592E071-23755
chr113607170436072148E071-23199
chr113607365436073792E071-21555
chr113607440736074507E071-20840
chr113607459936074661E071-20686
chr113607471136075231E071-20116
chr113607528436076200E071-19147
chr113607666836076928E071-18419
chr113607700836077244E071-18103
chr113609117436092550E071-2797
chr113609272336092795E071-2552
chr113609279736092852E071-2495
chr113609321636093266E071-2081
chr113609327236093335E071-2012
chr113609353636093731E071-1616
chr113609377036093890E071-1457
chr113609392136094275E071-1072
chr113609436636095630E0710
chr113609573436095898E071387
chr113609593536096052E071588
chr113609613936096404E071792
chr113610978136110413E07114434
chr113611048336110691E07115136
chr113611200436112054E07116657
chr113611205836112133E07116711
chr113611218036112343E07116833
chr113611241836112742E07117071
chr113611969736119895E07124350
chr113611990636120223E07124559
chr113612029536120414E07124948
chr113612046636120797E07125119
chr113612128136121595E07125934
chr113612630136127260E07130954
chr113612728436127657E07131937
chr113612786136127991E07132514
chr113612799736128069E07132650
chr113612812136128194E07132774
chr113613070636133107E07135359
chr113605161336052883E072-42464
chr113605795136058050E072-37297
chr113605809036058202E072-37145
chr113605828836058403E072-36944
chr113605843536058546E072-36801
chr113605859436058931E072-36416
chr113607459936074661E072-20686
chr113607471136075231E072-20116
chr113607528436076200E072-19147
chr113609117436092550E072-2797
chr113609272336092795E072-2552
chr113609279736092852E072-2495
chr113609321636093266E072-2081
chr113609327236093335E072-2012
chr113609353636093731E072-1616
chr113609377036093890E072-1457
chr113609392136094275E072-1072
chr113609436636095630E0720
chr113609573436095898E072387
chr113609593536096052E072588
chr113609613936096404E072792
chr113609641536097227E0721068
chr113610978136110413E07214434
chr113611048336110691E07215136
chr113611072236110840E07215375
chr113611969736119895E07224350
chr113611990636120223E07224559
chr113612029536120414E07224948
chr113612046636120797E07225119
chr113612128136121595E07225934
chr113612630136127260E07230954
chr113612728436127657E07231937
chr113612786136127991E07232514
chr113612799736128069E07232650
chr113604629736046421E073-48926
chr113604964636049727E073-45620
chr113604982736049881E073-45466
chr113605161336052883E073-42464
chr113605294236053041E073-42306
chr113605310136053157E073-42190
chr113605324436053294E073-42053
chr113605362336053677E073-41670
chr113605370536053876E073-41471
chr113605471536055607E073-39740
chr113605795136058050E073-37297
chr113605809036058202E073-37145
chr113605828836058403E073-36944
chr113605843536058546E073-36801
chr113605859436058931E073-36416
chr113607339236073620E073-21727
chr113607365436073792E073-21555
chr113607471136075231E073-20116
chr113609436636095630E0730
chr113609573436095898E073387
chr113609593536096052E073588
chr113609613936096404E073792
chr113611878036118868E07323433
chr113611891236118972E07323565
chr113611969736119895E07324350
chr113611990636120223E07324559
chr113612029536120414E07324948
chr113612046636120797E07325119
chr113612630136127260E07330954
chr113612728436127657E07331937
chr113612786136127991E07332514
chr113612799736128069E07332650
chr113613058736130656E07335240
chr113613070636133107E07335359
chr113605095136051062E074-44285
chr113605109136051141E074-44206
chr113605130336051363E074-43984
chr113605161336052883E074-42464
chr113605294236053041E074-42306
chr113605310136053157E074-42190
chr113605324436053294E074-42053
chr113605471536055607E074-39740
chr113605755436057730E074-37617
chr113605795136058050E074-37297
chr113605809036058202E074-37145
chr113605828836058403E074-36944
chr113605843536058546E074-36801
chr113605859436058931E074-36416
chr113605925336059310E074-36037
chr113605955836059612E074-35735
chr113605973136059771E074-35576
chr113605995136059991E074-35356
chr113606000036060167E074-35180
chr113606117136061381E074-33966
chr113606146936061555E074-33792
chr113606490436064971E074-30376
chr113606504336065087E074-30260
chr113606522136065381E074-29966
chr113606543736065541E074-29806
chr113606807336068123E074-27224
chr113606823036068408E074-26939
chr113606862836068731E074-26616
chr113606886136068911E074-26436
chr113606893236069251E074-26096
chr113606935136069499E074-25848
chr113606951336069553E074-25794
chr113606958636069630E074-25717
chr113607086136071304E074-24043
chr113607151236071592E074-23755
chr113607170436072148E074-23199
chr113607365436073792E074-21555
chr113607407836074136E074-21211
chr113607471136075231E074-20116
chr113607528436076200E074-19147
chr113607790036078446E074-16901
chr113609067736090997E074-4350
chr113609100236091114E074-4233
chr113609117436092550E074-2797
chr113609272336092795E074-2552
chr113609279736092852E074-2495
chr113609321636093266E074-2081
chr113609327236093335E074-2012
chr113609353636093731E074-1616
chr113609377036093890E074-1457
chr113609392136094275E074-1072
chr113609436636095630E0740
chr113609573436095898E074387
chr113609593536096052E074588
chr113609613936096404E074792
chr113609641536097227E0741068
chr113610978136110413E07414434
chr113611048336110691E07415136
chr113611072236110840E07415375
chr113611969736119895E07424350
chr113611990636120223E07424559
chr113612029536120414E07424948
chr113612046636120797E07425119
chr113612128136121595E07425934
chr113612179936121849E07426452
chr113612592636126172E07430579
chr113612630136127260E07430954
chr113612786136127991E07432514
chr113612799736128069E07432650
chr113612812136128194E07432774
chr113613762836138023E07442281
chr113613811336138153E07442766
chr113614217036142220E07446823
chr113614222336142273E07446876
chr113614235736142411E07447010
chr113614244836142554E07447101
chr113614274336142920E07447396
chr113614297036143010E07447623
chr113614311436143164E07447767
chr113614318436143308E07447837
chr113614334436143394E07447997
chr113614352436143683E07448177
chr113614407336144123E07448726
chr113614414836144360E07448801
chr113614443736144602E07449090
chr113605161336052883E081-42464
chr113605294236053041E081-42306
chr113605310136053157E081-42190
chr113605324436053294E081-42053
chr113605362336053677E081-41670
chr113605370536053876E081-41471
chr113606146936061555E081-33792
chr113606160336061681E081-33666
chr113606175536061808E081-33539
chr113606352636063616E081-31731
chr113606363336063881E081-31466
chr113606389736064152E081-31195
chr113606862836068731E081-26616
chr113606886136068911E081-26436
chr113606893236069251E081-26096
chr113606935136069499E081-25848
chr113606951336069553E081-25794
chr113606958636069630E081-25717
chr113607022636070726E081-24621
chr113607170436072148E081-23199
chr113607339236073620E081-21727
chr113607365436073792E081-21555
chr113607407836074136E081-21211
chr113607440736074507E081-20840
chr113607459936074661E081-20686
chr113607471136075231E081-20116
chr113607528436076200E081-19147
chr113607666836076928E081-18419
chr113609436636095630E0810
chr113609573436095898E081387
chr113609593536096052E081588
chr113610183836102021E0816491
chr113611969736119895E08124350
chr113611990636120223E08124559
chr113612029536120414E08124948
chr113612046636120797E08125119
chr113612128136121595E08125934
chr113612630136127260E08130954
chr113612728436127657E08131937
chr113613058736130656E08135240
chr113613070636133107E08135359
chr113613341336133515E08138066
chr113613762836138023E08142281
chr113613811336138153E08142766
chr113613864836138697E08143301
chr113613878336138903E08143436
chr113613926636139316E08143919
chr113613992436140145E08144577
chr113604552336045766E082-49581
chr113605161336052883E082-42464
chr113605294236053041E082-42306
chr113605310136053157E082-42190
chr113605324436053294E082-42053
chr113605795136058050E082-37297
chr113605809036058202E082-37145
chr113605828836058403E082-36944
chr113605843536058546E082-36801
chr113605859436058931E082-36416
chr113606823036068408E082-26939
chr113606862836068731E082-26616
chr113606886136068911E082-26436
chr113606893236069251E082-26096
chr113606935136069499E082-25848
chr113606951336069553E082-25794
chr113606958636069630E082-25717
chr113607170436072148E082-23199
chr113607528436076200E082-19147
chr113608023536080285E082-15062
chr113609067736090997E082-4350
chr113609100236091114E082-4233
chr113609436636095630E0820
chr113609573436095898E082387
chr113609593536096052E082588
chr113611969736119895E08224350
chr113611990636120223E08224559
chr113612029536120414E08224948
chr113612046636120797E08225119
chr113612630136127260E08230954
chr113612728436127657E08231937
chr113613058736130656E08235240
chr113613070636133107E08235359
chr113613762836138023E08242281
chr113613811336138153E08242766
chr113613926636139316E08243919
chr113613975336139850E08244406
chr113613992436140145E08244577