rs11041679

Homo sapiens
C>A / C>T
OR10A3 : 2KB Upstream Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0321 (9612/29894,GnomAD)
A=0315 (9195/29118,TOPMED)
A=0316 (1583/5008,1000G)
A=0375 (1445/3854,ALSPAC)
A=0371 (1375/3708,TWINSUK)
chr11:7940205 (GRCh38.p7) (11p15.4)
AD
GWASdb2
1   publication(s)
See rs on genome
6 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.7940205C>A
GRCh38.p7 chr 11NC_000011.10:g.7940205C>T
GRCh37.p13 chr 11NC_000011.9:g.7961752C>A
GRCh37.p13 chr 11NC_000011.9:g.7961752C>T
GRCh38.p7 chr 11 novel patch HSCHR11_1_CTG1_2NW_011332695.1:g.171199C>A
GRCh38.p7 chr 11 novel patch HSCHR11_1_CTG1_2NW_011332695.1:g.171199C>T
GRCh38.p7 chr 11 alt locus HSCHR11_1_CTG5NT_187583.1:g.171706C>A
GRCh38.p7 chr 11 alt locus HSCHR11_1_CTG5NT_187583.1:g.171706C>T

Gene: OR10A3, olfactory receptor family 10 subfamily A member 3(minus strand): 2KB Upstream Variant

Molecule type Change Amino acid[Codon] SO Term
OR10A3 transcriptNM_001003745.1:c.N/AUpstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.771A=0.229
1000GenomesAmericanSub694C=0.560A=0.440
1000GenomesEast AsianSub1008C=0.734A=0.266
1000GenomesEuropeSub1006C=0.654A=0.346
1000GenomesGlobalStudy-wide5008C=0.684A=0.316
1000GenomesSouth AsianSub978C=0.640A=0.360
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.625A=0.375
The Genome Aggregation DatabaseAfricanSub8708C=0.749T=0.000
The Genome Aggregation DatabaseAmericanSub830C=0.570T=0.00,
The Genome Aggregation DatabaseEast AsianSub1616C=0.713T=0.000
The Genome Aggregation DatabaseEuropeSub18440C=0.645T=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29894C=0.678T=0.000
The Genome Aggregation DatabaseOtherSub300C=0.770T=0.00,
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.684A=0.315
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.629A=0.371
PMID Title Author Journal
23953852Genome-wide association studies of maximum number of drinks.Pan YJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs110416797.42E-05alcohol consumption23953852

eQTL of rs11041679 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11041679 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr118113147481131625E074-6241
chr118109089881090948E081-46918
chr118109098481091034E081-46832
chr118109130781091424E081-46442
chr118109144281091808E081-46058
chr118109197581092136E081-45730