SNP Detail Info-rs11062784

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

CRACR2A : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0492 (14728/29906,GnomAD)
G=0445 (12974/29118,TOPMED)
G=0466 (2332/5008,1000G)
A==0466 (1795/3854,ALSPAC)
A==0471 (1747/3708,TWINSUK)

Position: chr12:3745301 (GRCh38.p7) (12p13.32)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 11 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 12	NC_000012.12:g.3745301A>G
GRCh37.p13 chr 12	NC_000012.11:g.3854467A>G

Molecule type	Change	Amino acid[Codon]	SO Term
CRACR2A transcript variant 1	NM_001144958.1:c.	N/A	Intron Variant
CRACR2A transcript variant 3	NM_032680.3:c.	N/A	Intron Variant
CRACR2A transcript variant X1	XM_006719021.3:c.	N/A	Intron Variant
CRACR2A transcript variant X2	XM_011521034.2:c.	N/A	Intron Variant
CRACR2A transcript variant X3	XM_011521036.2:c.	N/A	Genic Upstream Transcript Variant
CRACR2A transcript variant X4	XM_011521037.2:c.	N/A	Genic Upstream Transcript Variant
CRACR2A transcript variant X5	XM_011521038.2:c.	N/A	Genic Upstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.688	G=0.312
1000Genomes	American	Sub	694	A=0.460	G=0.540
1000Genomes	East Asian	Sub	1008	A=0.435	G=0.565
1000Genomes	Europe	Sub	1006	A=0.446	G=0.554
1000Genomes	Global	Study-wide	5008	A=0.534	G=0.466
1000Genomes	South Asian	Sub	978	A=0.580	G=0.420
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.466	G=0.534
The Genome Aggregation Database	African	Sub	8686	A=0.650	G=0.350
The Genome Aggregation Database	American	Sub	838	A=0.360	G=0.640
The Genome Aggregation Database	East Asian	Sub	1620	A=0.477	G=0.523
The Genome Aggregation Database	Europe	Sub	18460	A=0.450	G=0.549
The Genome Aggregation Database	Global	Study-wide	29906	A=0.507	G=0.492
The Genome Aggregation Database	Other	Sub	302	A=0.490	G=0.510
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.554	G=0.445
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.471	G=0.529

PMID	Title	Author	Journal
19268276	Genome-wide association study of smoking initiation and current smoking.	Vink JM	Am J Hum Genet

SNP ID	p-value	Traits	Study
rs11062784	0.000628	nicotine smoking	19268276

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr12	3900571	3900657	E068	46104
chr12	3900720	3900965	E068	46253
chr12	3900967	3901089	E068	46500
chr12	3900571	3900657	E069	46104
chr12	3900720	3900965	E069	46253
chr12	3900967	3901089	E069	46500
chr12	3807322	3808113	E070	-46354
chr12	3881141	3881533	E070	26674
chr12	3881541	3881980	E070	27074
chr12	3900571	3900657	E072	46104
chr12	3900720	3900965	E072	46253

rs11062784