| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 20 | NC_000020.11:g.51098219G>A |
| GRCh37.p13 chr 20 | NC_000020.10:g.49714756G>A |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | G=0.679 | A=0.321 |
| 1000Genomes | American | Sub | 694 | G=0.570 | A=0.430 |
| 1000Genomes | East Asian | Sub | 1008 | G=0.830 | A=0.170 |
| 1000Genomes | Europe | Sub | 1006 | G=0.545 | A=0.455 |
| 1000Genomes | Global | Study-wide | 5008 | G=0.685 | A=0.315 |
| 1000Genomes | South Asian | Sub | 978 | G=0.770 | A=0.230 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.551 | A=0.449 |
| The Genome Aggregation Database | African | Sub | 8690 | G=0.654 | A=0.346 |
| The Genome Aggregation Database | American | Sub | 836 | G=0.510 | A=0.490 |
| The Genome Aggregation Database | East Asian | Sub | 1612 | G=0.846 | A=0.154 |
| The Genome Aggregation Database | Europe | Sub | 18454 | G=0.535 | A=0.465 |
| The Genome Aggregation Database | Global | Study-wide | 29894 | G=0.586 | A=0.414 |
| The Genome Aggregation Database | Other | Sub | 302 | G=0.580 | A=0.420 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.603 | A=0.396 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.532 | A=0.468 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 17158188 | Novel genes identified in a high-density genome wide association study for nicotine dependence. | Bierut LJ | Hum Mol Genet |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs11086322 | 0.000149 | nicotine dependence | 17158188 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr20 | 49737902 | 49738151 | E067 | 23146 |
| chr20 | 49738172 | 49738299 | E067 | 23416 |
| chr20 | 49693295 | 49693713 | E068 | -21043 |
| chr20 | 49693848 | 49694265 | E068 | -20491 |
| chr20 | 49694305 | 49694423 | E068 | -20333 |
| chr20 | 49711939 | 49712019 | E068 | -2737 |
| chr20 | 49712153 | 49712356 | E068 | -2400 |
| chr20 | 49712404 | 49712541 | E068 | -2215 |
| chr20 | 49712777 | 49712891 | E068 | -1865 |
| chr20 | 49715271 | 49715385 | E068 | 515 |
| chr20 | 49737661 | 49737795 | E068 | 22905 |
| chr20 | 49737902 | 49738151 | E068 | 23146 |
| chr20 | 49693848 | 49694265 | E069 | -20491 |
| chr20 | 49710879 | 49711214 | E069 | -3542 |
| chr20 | 49711226 | 49711276 | E069 | -3480 |
| chr20 | 49711402 | 49711472 | E069 | -3284 |
| chr20 | 49711552 | 49711602 | E069 | -3154 |
| chr20 | 49714653 | 49714735 | E069 | -21 |
| chr20 | 49674329 | 49674379 | E070 | -40377 |
| chr20 | 49676997 | 49677251 | E070 | -37505 |
| chr20 | 49677280 | 49677518 | E070 | -37238 |
| chr20 | 49677953 | 49678207 | E070 | -36549 |
| chr20 | 49692210 | 49692341 | E070 | -22415 |
| chr20 | 49692446 | 49692513 | E070 | -22243 |
| chr20 | 49693295 | 49693713 | E070 | -21043 |
| chr20 | 49693848 | 49694265 | E070 | -20491 |
| chr20 | 49694305 | 49694423 | E070 | -20333 |
| chr20 | 49694764 | 49694976 | E070 | -19780 |
| chr20 | 49695085 | 49695142 | E070 | -19614 |
| chr20 | 49708213 | 49709474 | E070 | -5282 |
| chr20 | 49709608 | 49709793 | E070 | -4963 |
| chr20 | 49709870 | 49710289 | E070 | -4467 |
| chr20 | 49710461 | 49710539 | E070 | -4217 |
| chr20 | 49711552 | 49711602 | E070 | -3154 |
| chr20 | 49711939 | 49712019 | E070 | -2737 |
| chr20 | 49712153 | 49712356 | E070 | -2400 |
| chr20 | 49712404 | 49712541 | E070 | -2215 |
| chr20 | 49712777 | 49712891 | E070 | -1865 |
| chr20 | 49714653 | 49714735 | E070 | -21 |
| chr20 | 49715271 | 49715385 | E070 | 515 |
| chr20 | 49715478 | 49715767 | E070 | 722 |
| chr20 | 49716814 | 49717049 | E070 | 2058 |
| chr20 | 49717212 | 49717497 | E070 | 2456 |
| chr20 | 49723985 | 49724474 | E070 | 9229 |
| chr20 | 49724581 | 49724714 | E070 | 9825 |
| chr20 | 49724736 | 49724808 | E070 | 9980 |
| chr20 | 49724916 | 49724966 | E070 | 10160 |
| chr20 | 49725081 | 49725131 | E070 | 10325 |
| chr20 | 49738172 | 49738299 | E070 | 23416 |
| chr20 | 49748386 | 49748766 | E070 | 33630 |
| chr20 | 49748790 | 49749475 | E070 | 34034 |
| chr20 | 49755305 | 49755563 | E070 | 40549 |
| chr20 | 49755634 | 49755736 | E070 | 40878 |
| chr20 | 49755969 | 49756281 | E070 | 41213 |
| chr20 | 49756545 | 49756628 | E070 | 41789 |
| chr20 | 49715271 | 49715385 | E071 | 515 |
| chr20 | 49715478 | 49715767 | E071 | 722 |
| chr20 | 49748790 | 49749475 | E071 | 34034 |
| chr20 | 49693295 | 49693713 | E072 | -21043 |
| chr20 | 49714653 | 49714735 | E072 | -21 |
| chr20 | 49693295 | 49693713 | E073 | -21043 |
| chr20 | 49693848 | 49694265 | E073 | -20491 |
| chr20 | 49711939 | 49712019 | E073 | -2737 |
| chr20 | 49712153 | 49712356 | E073 | -2400 |
| chr20 | 49712404 | 49712541 | E073 | -2215 |
| chr20 | 49712777 | 49712891 | E073 | -1865 |
| chr20 | 49737518 | 49737643 | E073 | 22762 |
| chr20 | 49737661 | 49737795 | E073 | 22905 |
| chr20 | 49737902 | 49738151 | E073 | 23146 |
| chr20 | 49738172 | 49738299 | E073 | 23416 |
| chr20 | 49693295 | 49693713 | E074 | -21043 |
| chr20 | 49693848 | 49694265 | E074 | -20491 |
| chr20 | 49714653 | 49714735 | E074 | -21 |
| chr20 | 49742114 | 49742797 | E074 | 27358 |
| chr20 | 49676997 | 49677251 | E081 | -37505 |
| chr20 | 49677280 | 49677518 | E081 | -37238 |
| chr20 | 49691981 | 49692175 | E081 | -22581 |
| chr20 | 49692210 | 49692341 | E081 | -22415 |
| chr20 | 49692446 | 49692513 | E081 | -22243 |
| chr20 | 49692585 | 49692635 | E081 | -22121 |
| chr20 | 49692732 | 49692805 | E081 | -21951 |
| chr20 | 49693295 | 49693713 | E081 | -21043 |
| chr20 | 49693848 | 49694265 | E081 | -20491 |
| chr20 | 49694305 | 49694423 | E081 | -20333 |
| chr20 | 49694764 | 49694976 | E081 | -19780 |
| chr20 | 49695085 | 49695142 | E081 | -19614 |
| chr20 | 49695266 | 49695316 | E081 | -19440 |
| chr20 | 49695487 | 49695537 | E081 | -19219 |
| chr20 | 49708213 | 49709474 | E081 | -5282 |
| chr20 | 49709608 | 49709793 | E081 | -4963 |
| chr20 | 49709870 | 49710289 | E081 | -4467 |
| chr20 | 49710461 | 49710539 | E081 | -4217 |
| chr20 | 49710879 | 49711214 | E081 | -3542 |
| chr20 | 49711226 | 49711276 | E081 | -3480 |
| chr20 | 49711402 | 49711472 | E081 | -3284 |
| chr20 | 49711552 | 49711602 | E081 | -3154 |
| chr20 | 49711939 | 49712019 | E081 | -2737 |
| chr20 | 49712153 | 49712356 | E081 | -2400 |
| chr20 | 49712404 | 49712541 | E081 | -2215 |
| chr20 | 49712777 | 49712891 | E081 | -1865 |
| chr20 | 49714653 | 49714735 | E081 | -21 |
| chr20 | 49715271 | 49715385 | E081 | 515 |
| chr20 | 49715478 | 49715767 | E081 | 722 |
| chr20 | 49723985 | 49724474 | E081 | 9229 |
| chr20 | 49724581 | 49724714 | E081 | 9825 |
| chr20 | 49724736 | 49724808 | E081 | 9980 |
| chr20 | 49724916 | 49724966 | E081 | 10160 |
| chr20 | 49737902 | 49738151 | E081 | 23146 |
| chr20 | 49738172 | 49738299 | E081 | 23416 |
| chr20 | 49738406 | 49739252 | E081 | 23650 |
| chr20 | 49748790 | 49749475 | E081 | 34034 |
| chr20 | 49667194 | 49667244 | E082 | -47512 |
| chr20 | 49667271 | 49667514 | E082 | -47242 |
| chr20 | 49691981 | 49692175 | E082 | -22581 |
| chr20 | 49692210 | 49692341 | E082 | -22415 |
| chr20 | 49693295 | 49693713 | E082 | -21043 |
| chr20 | 49693848 | 49694265 | E082 | -20491 |
| chr20 | 49694305 | 49694423 | E082 | -20333 |
| chr20 | 49694764 | 49694976 | E082 | -19780 |
| chr20 | 49697014 | 49697251 | E082 | -17505 |
| chr20 | 49697321 | 49697482 | E082 | -17274 |
| chr20 | 49700824 | 49701002 | E082 | -13754 |
| chr20 | 49701205 | 49701461 | E082 | -13295 |
| chr20 | 49708213 | 49709474 | E082 | -5282 |
| chr20 | 49709608 | 49709793 | E082 | -4963 |
| chr20 | 49709870 | 49710289 | E082 | -4467 |
| chr20 | 49710461 | 49710539 | E082 | -4217 |
| chr20 | 49710879 | 49711214 | E082 | -3542 |
| chr20 | 49711226 | 49711276 | E082 | -3480 |
| chr20 | 49711402 | 49711472 | E082 | -3284 |
| chr20 | 49711552 | 49711602 | E082 | -3154 |
| chr20 | 49711939 | 49712019 | E082 | -2737 |
| chr20 | 49712153 | 49712356 | E082 | -2400 |
| chr20 | 49712404 | 49712541 | E082 | -2215 |
| chr20 | 49712777 | 49712891 | E082 | -1865 |
| chr20 | 49714653 | 49714735 | E082 | -21 |
| chr20 | 49715271 | 49715385 | E082 | 515 |
| chr20 | 49715478 | 49715767 | E082 | 722 |
| chr20 | 49723985 | 49724474 | E082 | 9229 |
| chr20 | 49737902 | 49738151 | E082 | 23146 |
| chr20 | 49738172 | 49738299 | E082 | 23416 |
| chr20 | 49742114 | 49742797 | E082 | 27358 |
| chr20 | 49748386 | 49748766 | E082 | 33630 |
| chr20 | 49748790 | 49749475 | E082 | 34034 |