rs11097740

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
C==0283 (8472/29906,GnomAD)
C==0302 (8818/29118,TOPMED)
C==0270 (1350/5008,1000G)
C==0334 (1289/3854,ALSPAC)
C==0348 (1290/3708,TWINSUK)
chr4:100793800 (GRCh38.p7) (4q24)
AD
GWASdb2
1   publication(s)
See rs on genome
10 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.100793800C>T
GRCh37.p13 chr 4NC_000004.11:g.101714957C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.235T=0.765
1000GenomesAmericanSub694C=0.300T=0.700
1000GenomesEast AsianSub1008C=0.249T=0.751
1000GenomesEuropeSub1006C=0.299T=0.701
1000GenomesGlobalStudy-wide5008C=0.270T=0.730
1000GenomesSouth AsianSub978C=0.290T=0.710
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.334T=0.666
The Genome Aggregation DatabaseAfricanSub8712C=0.238T=0.762
The Genome Aggregation DatabaseAmericanSub838C=0.260T=0.740
The Genome Aggregation DatabaseEast AsianSub1614C=0.241T=0.759
The Genome Aggregation DatabaseEuropeSub18440C=0.308T=0.692
The Genome Aggregation DatabaseGlobalStudy-wide29906C=0.283T=0.716
The Genome Aggregation DatabaseOtherSub302C=0.360T=0.640
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.302T=0.697
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.348T=0.652
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs110977400.00096alcohol dependence20201924

eQTL of rs11097740 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11097740 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr4101711951101712501E068-2456
chr4101725883101725983E07010926
chr4101726185101726235E07011228
chr4101726341101726422E07011384
chr4101732308101732502E07017351
chr4101711951101712501E071-2456
chr4101711951101712501E074-2456
chr4101737756101737878E08122799
chr4101737915101738132E08122958
chr4101744874101745189E08229917