rs11104778

Homo sapiens
C>G
None
Check p-value
SNV (Single Nucleotide Variation)
C==0472 (14117/29854,GnomAD)
G=0453 (13201/29118,TOPMED)
C==0475 (2379/5008,1000G)
C==0367 (1413/3854,ALSPAC)
C==0363 (1345/3708,TWINSUK)
chr12:88249525 (GRCh38.p7) (12q21.32)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 12NC_000012.12:g.88249525C>G
GRCh37.p13 chr 12NC_000012.11:g.88643302C>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.856G=0.144
1000GenomesAmericanSub694C=0.390G=0.610
1000GenomesEast AsianSub1008C=0.261G=0.739
1000GenomesEuropeSub1006C=0.338G=0.662
1000GenomesGlobalStudy-wide5008C=0.475G=0.525
1000GenomesSouth AsianSub978C=0.380G=0.620
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.367G=0.633
The Genome Aggregation DatabaseAfricanSub8692C=0.769G=0.231
The Genome Aggregation DatabaseAmericanSub834C=0.390G=0.610
The Genome Aggregation DatabaseEast AsianSub1594C=0.219G=0.781
The Genome Aggregation DatabaseEuropeSub18434C=0.361G=0.638
The Genome Aggregation DatabaseGlobalStudy-wide29854C=0.472G=0.527
The Genome Aggregation DatabaseOtherSub300C=0.350G=0.650
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.546G=0.453
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.363G=0.637
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs111047780.000621alcohol dependence21314694

eQTL of rs11104778 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11104778 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.