| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 12 | NC_000012.12:g.104497619G>T |
| GRCh37.p13 chr 12 | NC_000012.11:g.104891397G>T |
| CHST11 RefSeqGene | NG_029810.1:g.45706G>T |
| Molecule type | Change | Amino acid[Codon] | SO Term |
|---|---|---|---|
| CHST11 transcript variant 2 | NM_001173982.1:c. | N/A | Intron Variant |
| CHST11 transcript variant 1 | NM_018413.5:c. | N/A | Intron Variant |
| CHST11 transcript variant X1 | XM_017019369.1:c. | N/A | Genic Upstream Transcript Variant |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | G=0.840 | T=0.160 |
| 1000Genomes | American | Sub | 694 | G=0.970 | T=0.030 |
| 1000Genomes | East Asian | Sub | 1008 | G=1.000 | T=0.000 |
| 1000Genomes | Europe | Sub | 1006 | G=0.974 | T=0.026 |
| 1000Genomes | Global | Study-wide | 5008 | G=0.944 | T=0.056 |
| 1000Genomes | South Asian | Sub | 978 | G=0.980 | T=0.020 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.982 | T=0.018 |
| The Genome Aggregation Database | African | Sub | 8724 | G=0.862 | T=0.138 |
| The Genome Aggregation Database | American | Sub | 838 | G=0.980 | T=0.020 |
| The Genome Aggregation Database | East Asian | Sub | 1620 | G=1.000 | T=0.000 |
| The Genome Aggregation Database | Europe | Sub | 18488 | G=0.983 | T=0.017 |
| The Genome Aggregation Database | Global | Study-wide | 29972 | G=0.948 | T=0.051 |
| The Genome Aggregation Database | Other | Sub | 302 | G=1.000 | T=0.000 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.923 | T=0.076 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.978 | T=0.022 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 19268276 | Genome-wide association study of smoking initiation and current smoking. | Vink JM | Am J Hum Genet |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs11112082 | 0.000753 | nicotine smoking | 19268276 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr12 | 104879947 | 104880042 | E067 | -11355 |
| chr12 | 104880120 | 104880613 | E067 | -10784 |
| chr12 | 104880678 | 104881066 | E067 | -10331 |
| chr12 | 104904031 | 104904421 | E067 | 12634 |
| chr12 | 104904473 | 104904575 | E067 | 13076 |
| chr12 | 104912778 | 104913952 | E067 | 21381 |
| chr12 | 104916823 | 104917796 | E067 | 25426 |
| chr12 | 104917853 | 104918187 | E067 | 26456 |
| chr12 | 104849264 | 104849629 | E068 | -41768 |
| chr12 | 104857731 | 104857828 | E068 | -33569 |
| chr12 | 104858719 | 104859168 | E068 | -32229 |
| chr12 | 104862938 | 104863072 | E068 | -28325 |
| chr12 | 104863143 | 104863584 | E068 | -27813 |
| chr12 | 104866377 | 104866560 | E068 | -24837 |
| chr12 | 104866597 | 104866647 | E068 | -24750 |
| chr12 | 104866937 | 104867127 | E068 | -24270 |
| chr12 | 104867133 | 104867815 | E068 | -23582 |
| chr12 | 104879368 | 104879915 | E068 | -11482 |
| chr12 | 104879947 | 104880042 | E068 | -11355 |
| chr12 | 104880120 | 104880613 | E068 | -10784 |
| chr12 | 104880678 | 104881066 | E068 | -10331 |
| chr12 | 104881084 | 104881548 | E068 | -9849 |
| chr12 | 104881945 | 104882012 | E068 | -9385 |
| chr12 | 104882123 | 104882385 | E068 | -9012 |
| chr12 | 104882393 | 104882517 | E068 | -8880 |
| chr12 | 104887001 | 104887080 | E068 | -4317 |
| chr12 | 104887127 | 104887278 | E068 | -4119 |
| chr12 | 104887447 | 104887631 | E068 | -3766 |
| chr12 | 104889062 | 104889129 | E068 | -2268 |
| chr12 | 104889145 | 104889209 | E068 | -2188 |
| chr12 | 104889601 | 104889707 | E068 | -1690 |
| chr12 | 104898893 | 104899090 | E068 | 7496 |
| chr12 | 104899095 | 104899180 | E068 | 7698 |
| chr12 | 104899183 | 104899571 | E068 | 7786 |
| chr12 | 104899619 | 104899681 | E068 | 8222 |
| chr12 | 104899729 | 104899789 | E068 | 8332 |
| chr12 | 104903764 | 104903832 | E068 | 12367 |
| chr12 | 104903920 | 104904022 | E068 | 12523 |
| chr12 | 104904031 | 104904421 | E068 | 12634 |
| chr12 | 104904473 | 104904575 | E068 | 13076 |
| chr12 | 104905155 | 104905307 | E068 | 13758 |
| chr12 | 104905315 | 104905365 | E068 | 13918 |
| chr12 | 104908625 | 104908694 | E068 | 17228 |
| chr12 | 104908768 | 104908831 | E068 | 17371 |
| chr12 | 104908899 | 104908949 | E068 | 17502 |
| chr12 | 104908954 | 104909214 | E068 | 17557 |
| chr12 | 104909307 | 104909387 | E068 | 17910 |
| chr12 | 104909467 | 104909532 | E068 | 18070 |
| chr12 | 104909629 | 104909764 | E068 | 18232 |
| chr12 | 104913979 | 104914812 | E068 | 22582 |
| chr12 | 104914818 | 104914991 | E068 | 23421 |
| chr12 | 104916823 | 104917796 | E068 | 25426 |
| chr12 | 104917853 | 104918187 | E068 | 26456 |
| chr12 | 104918484 | 104918609 | E068 | 27087 |
| chr12 | 104934205 | 104934285 | E068 | 42808 |
| chr12 | 104934420 | 104934537 | E068 | 43023 |
| chr12 | 104934630 | 104934716 | E068 | 43233 |
| chr12 | 104934726 | 104935104 | E068 | 43329 |
| chr12 | 104935140 | 104935216 | E068 | 43743 |
| chr12 | 104870749 | 104870907 | E069 | -20490 |
| chr12 | 104870999 | 104871136 | E069 | -20261 |
| chr12 | 104873485 | 104873702 | E069 | -17695 |
| chr12 | 104873729 | 104873795 | E069 | -17602 |
| chr12 | 104873819 | 104873894 | E069 | -17503 |
| chr12 | 104873901 | 104874024 | E069 | -17373 |
| chr12 | 104880120 | 104880613 | E069 | -10784 |
| chr12 | 104880678 | 104881066 | E069 | -10331 |
| chr12 | 104881084 | 104881548 | E069 | -9849 |
| chr12 | 104897091 | 104897189 | E069 | 5694 |
| chr12 | 104913979 | 104914812 | E069 | 22582 |
| chr12 | 104914818 | 104914991 | E069 | 23421 |
| chr12 | 104915091 | 104915151 | E069 | 23694 |
| chr12 | 104915236 | 104915446 | E069 | 23839 |
| chr12 | 104915493 | 104915769 | E069 | 24096 |
| chr12 | 104918484 | 104918609 | E069 | 27087 |
| chr12 | 104866377 | 104866560 | E070 | -24837 |
| chr12 | 104866597 | 104866647 | E070 | -24750 |
| chr12 | 104866937 | 104867127 | E070 | -24270 |
| chr12 | 104879947 | 104880042 | E070 | -11355 |
| chr12 | 104880120 | 104880613 | E070 | -10784 |
| chr12 | 104880678 | 104881066 | E070 | -10331 |
| chr12 | 104881084 | 104881548 | E070 | -9849 |
| chr12 | 104881945 | 104882012 | E070 | -9385 |
| chr12 | 104889455 | 104889544 | E070 | -1853 |
| chr12 | 104898695 | 104898892 | E070 | 7298 |
| chr12 | 104898893 | 104899090 | E070 | 7496 |
| chr12 | 104899095 | 104899180 | E070 | 7698 |
| chr12 | 104899183 | 104899571 | E070 | 7786 |
| chr12 | 104900076 | 104900161 | E070 | 8679 |
| chr12 | 104901346 | 104901717 | E070 | 9949 |
| chr12 | 104903764 | 104903832 | E070 | 12367 |
| chr12 | 104903920 | 104904022 | E070 | 12523 |
| chr12 | 104904031 | 104904421 | E070 | 12634 |
| chr12 | 104907394 | 104907865 | E070 | 15997 |
| chr12 | 104907925 | 104908091 | E070 | 16528 |
| chr12 | 104908148 | 104908245 | E070 | 16751 |
| chr12 | 104911472 | 104911646 | E070 | 20075 |
| chr12 | 104911662 | 104911712 | E070 | 20265 |
| chr12 | 104911718 | 104911774 | E070 | 20321 |
| chr12 | 104912099 | 104912232 | E070 | 20702 |
| chr12 | 104912284 | 104912381 | E070 | 20887 |
| chr12 | 104912441 | 104912694 | E070 | 21044 |
| chr12 | 104912778 | 104913952 | E070 | 21381 |
| chr12 | 104913979 | 104914812 | E070 | 22582 |
| chr12 | 104914818 | 104914991 | E070 | 23421 |
| chr12 | 104915091 | 104915151 | E070 | 23694 |
| chr12 | 104915236 | 104915446 | E070 | 23839 |
| chr12 | 104915493 | 104915769 | E070 | 24096 |
| chr12 | 104927567 | 104927651 | E070 | 36170 |
| chr12 | 104927809 | 104927903 | E070 | 36412 |
| chr12 | 104927997 | 104928560 | E070 | 36600 |
| chr12 | 104928665 | 104928733 | E070 | 37268 |
| chr12 | 104928771 | 104928877 | E070 | 37374 |
| chr12 | 104928950 | 104929054 | E070 | 37553 |
| chr12 | 104929203 | 104929432 | E070 | 37806 |
| chr12 | 104934630 | 104934716 | E070 | 43233 |
| chr12 | 104934726 | 104935104 | E070 | 43329 |
| chr12 | 104935140 | 104935216 | E070 | 43743 |
| chr12 | 104938704 | 104938868 | E070 | 47307 |
| chr12 | 104939002 | 104939083 | E070 | 47605 |
| chr12 | 104858719 | 104859168 | E071 | -32229 |
| chr12 | 104866377 | 104866560 | E071 | -24837 |
| chr12 | 104866597 | 104866647 | E071 | -24750 |
| chr12 | 104866937 | 104867127 | E071 | -24270 |
| chr12 | 104867133 | 104867815 | E071 | -23582 |
| chr12 | 104876403 | 104876635 | E071 | -14762 |
| chr12 | 104876644 | 104876803 | E071 | -14594 |
| chr12 | 104879947 | 104880042 | E071 | -11355 |
| chr12 | 104880120 | 104880613 | E071 | -10784 |
| chr12 | 104880678 | 104881066 | E071 | -10331 |
| chr12 | 104889601 | 104889707 | E071 | -1690 |
| chr12 | 104899095 | 104899180 | E071 | 7698 |
| chr12 | 104901192 | 104901242 | E071 | 9795 |
| chr12 | 104903764 | 104903832 | E071 | 12367 |
| chr12 | 104903920 | 104904022 | E071 | 12523 |
| chr12 | 104904031 | 104904421 | E071 | 12634 |
| chr12 | 104904473 | 104904575 | E071 | 13076 |
| chr12 | 104912778 | 104913952 | E071 | 21381 |
| chr12 | 104916823 | 104917796 | E071 | 25426 |
| chr12 | 104918828 | 104919091 | E071 | 27431 |
| chr12 | 104939798 | 104939897 | E071 | 48401 |
| chr12 | 104866597 | 104866647 | E072 | -24750 |
| chr12 | 104866937 | 104867127 | E072 | -24270 |
| chr12 | 104880120 | 104880613 | E072 | -10784 |
| chr12 | 104880678 | 104881066 | E072 | -10331 |
| chr12 | 104903764 | 104903832 | E072 | 12367 |
| chr12 | 104903920 | 104904022 | E072 | 12523 |
| chr12 | 104904031 | 104904421 | E072 | 12634 |
| chr12 | 104913979 | 104914812 | E072 | 22582 |
| chr12 | 104866377 | 104866560 | E073 | -24837 |
| chr12 | 104866597 | 104866647 | E073 | -24750 |
| chr12 | 104880678 | 104881066 | E073 | -10331 |
| chr12 | 104881084 | 104881548 | E073 | -9849 |
| chr12 | 104882123 | 104882385 | E073 | -9012 |
| chr12 | 104882393 | 104882517 | E073 | -8880 |
| chr12 | 104900424 | 104901172 | E073 | 9027 |
| chr12 | 104903920 | 104904022 | E073 | 12523 |
| chr12 | 104904031 | 104904421 | E073 | 12634 |
| chr12 | 104912778 | 104913952 | E073 | 21381 |
| chr12 | 104913979 | 104914812 | E073 | 22582 |
| chr12 | 104879368 | 104879915 | E074 | -11482 |
| chr12 | 104879947 | 104880042 | E074 | -11355 |
| chr12 | 104880120 | 104880613 | E074 | -10784 |
| chr12 | 104880678 | 104881066 | E074 | -10331 |
| chr12 | 104887127 | 104887278 | E074 | -4119 |
| chr12 | 104887447 | 104887631 | E074 | -3766 |
| chr12 | 104900424 | 104901172 | E074 | 9027 |
| chr12 | 104903920 | 104904022 | E074 | 12523 |
| chr12 | 104904031 | 104904421 | E074 | 12634 |
| chr12 | 104904473 | 104904575 | E074 | 13076 |
| chr12 | 104912778 | 104913952 | E074 | 21381 |
| chr12 | 104915091 | 104915151 | E074 | 23694 |
| chr12 | 104915236 | 104915446 | E074 | 23839 |
| chr12 | 104915493 | 104915769 | E074 | 24096 |
| chr12 | 104917853 | 104918187 | E074 | 26456 |
| chr12 | 104918484 | 104918609 | E074 | 27087 |
| chr12 | 104845746 | 104845806 | E081 | -45591 |
| chr12 | 104845811 | 104845865 | E081 | -45532 |
| chr12 | 104846017 | 104846251 | E081 | -45146 |
| chr12 | 104846394 | 104846507 | E081 | -44890 |
| chr12 | 104879368 | 104879915 | E081 | -11482 |
| chr12 | 104879947 | 104880042 | E081 | -11355 |
| chr12 | 104880120 | 104880613 | E081 | -10784 |
| chr12 | 104880678 | 104881066 | E081 | -10331 |
| chr12 | 104881084 | 104881548 | E081 | -9849 |
| chr12 | 104899095 | 104899180 | E081 | 7698 |
| chr12 | 104900424 | 104901172 | E081 | 9027 |
| chr12 | 104901192 | 104901242 | E081 | 9795 |
| chr12 | 104901346 | 104901717 | E081 | 9949 |
| chr12 | 104901724 | 104901827 | E081 | 10327 |
| chr12 | 104901831 | 104901888 | E081 | 10434 |
| chr12 | 104916823 | 104917796 | E081 | 25426 |
| chr12 | 104917853 | 104918187 | E081 | 26456 |
| chr12 | 104918484 | 104918609 | E081 | 27087 |
| chr12 | 104927997 | 104928560 | E081 | 36600 |
| chr12 | 104928665 | 104928733 | E081 | 37268 |
| chr12 | 104928771 | 104928877 | E081 | 37374 |
| chr12 | 104928950 | 104929054 | E081 | 37553 |
| chr12 | 104929203 | 104929432 | E081 | 37806 |
| chr12 | 104862581 | 104862621 | E082 | -28776 |
| chr12 | 104862659 | 104862734 | E082 | -28663 |
| chr12 | 104862788 | 104862916 | E082 | -28481 |
| chr12 | 104862938 | 104863072 | E082 | -28325 |
| chr12 | 104863143 | 104863584 | E082 | -27813 |
| chr12 | 104867133 | 104867815 | E082 | -23582 |
| chr12 | 104879368 | 104879915 | E082 | -11482 |
| chr12 | 104879947 | 104880042 | E082 | -11355 |
| chr12 | 104880678 | 104881066 | E082 | -10331 |
| chr12 | 104881084 | 104881548 | E082 | -9849 |
| chr12 | 104899619 | 104899681 | E082 | 8222 |
| chr12 | 104899729 | 104899789 | E082 | 8332 |
| chr12 | 104900076 | 104900161 | E082 | 8679 |
| chr12 | 104900424 | 104901172 | E082 | 9027 |
| chr12 | 104901192 | 104901242 | E082 | 9795 |
| chr12 | 104901346 | 104901717 | E082 | 9949 |
| chr12 | 104901724 | 104901827 | E082 | 10327 |
| chr12 | 104903920 | 104904022 | E082 | 12523 |
| chr12 | 104904031 | 104904421 | E082 | 12634 |
| chr12 | 104904473 | 104904575 | E082 | 13076 |
| chr12 | 104907394 | 104907865 | E082 | 15997 |
| chr12 | 104907925 | 104908091 | E082 | 16528 |
| chr12 | 104912778 | 104913952 | E082 | 21381 |
| chr12 | 104915493 | 104915769 | E082 | 24096 |
| chr12 | 104916071 | 104916121 | E082 | 24674 |
| chr12 | 104916823 | 104917796 | E082 | 25426 |
| chr12 | 104917853 | 104918187 | E082 | 26456 |
| Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
|---|---|---|---|---|
| chr12 | 104849658 | 104853772 | E067 | -37625 |
| chr12 | 104849658 | 104853772 | E068 | -37625 |
| chr12 | 104849658 | 104853772 | E069 | -37625 |
| chr12 | 104849658 | 104853772 | E070 | -37625 |
| chr12 | 104849658 | 104853772 | E071 | -37625 |
| chr12 | 104849658 | 104853772 | E072 | -37625 |
| chr12 | 104849658 | 104853772 | E073 | -37625 |
| chr12 | 104849658 | 104853772 | E074 | -37625 |
| chr12 | 104849658 | 104853772 | E081 | -37625 |
| chr12 | 104849658 | 104853772 | E082 | -37625 |