| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 12 | NC_000012.12:g.108405096T>C |
| GRCh37.p13 chr 12 | NC_000012.11:g.108798873T>C |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | T=0.943 | C=0.057 |
| 1000Genomes | American | Sub | 694 | T=0.920 | C=0.080 |
| 1000Genomes | East Asian | Sub | 1008 | T=0.618 | C=0.382 |
| 1000Genomes | Europe | Sub | 1006 | T=0.908 | C=0.092 |
| 1000Genomes | Global | Study-wide | 5008 | T=0.857 | C=0.143 |
| 1000Genomes | South Asian | Sub | 978 | T=0.890 | C=0.110 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | T=0.939 | C=0.061 |
| The Genome Aggregation Database | African | Sub | 8708 | T=0.947 | C=0.053 |
| The Genome Aggregation Database | American | Sub | 838 | T=0.930 | C=0.070 |
| The Genome Aggregation Database | East Asian | Sub | 1604 | T=0.599 | C=0.401 |
| The Genome Aggregation Database | Europe | Sub | 18372 | T=0.923 | C=0.077 |
| The Genome Aggregation Database | Global | Study-wide | 29824 | T=0.912 | C=0.087 |
| The Genome Aggregation Database | Other | Sub | 302 | T=0.890 | C=0.110 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | T=0.929 | C=0.070 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | T=0.943 | C=0.057 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs11113857 | 0.00028 | alcohol dependence | 20201924 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr12 | 108792846 | 108792909 | E067 | -5964 |
| chr12 | 108793164 | 108793244 | E067 | -5629 |
| chr12 | 108793302 | 108793564 | E067 | -5309 |
| chr12 | 108793571 | 108793686 | E067 | -5187 |
| chr12 | 108793302 | 108793564 | E068 | -5309 |
| chr12 | 108793571 | 108793686 | E068 | -5187 |
| chr12 | 108793884 | 108794031 | E068 | -4842 |
| chr12 | 108794290 | 108794526 | E068 | -4347 |
| chr12 | 108792496 | 108792546 | E069 | -6327 |
| chr12 | 108792846 | 108792909 | E069 | -5964 |
| chr12 | 108793884 | 108794031 | E069 | -4842 |
| chr12 | 108750708 | 108750830 | E070 | -48043 |
| chr12 | 108750902 | 108751017 | E070 | -47856 |
| chr12 | 108751033 | 108751198 | E070 | -47675 |
| chr12 | 108751237 | 108751342 | E070 | -47531 |
| chr12 | 108751393 | 108751453 | E070 | -47420 |
| chr12 | 108751810 | 108751888 | E070 | -46985 |
| chr12 | 108751971 | 108752021 | E070 | -46852 |
| chr12 | 108752089 | 108752248 | E070 | -46625 |
| chr12 | 108752432 | 108752555 | E070 | -46318 |
| chr12 | 108752639 | 108752870 | E070 | -46003 |
| chr12 | 108752970 | 108753020 | E070 | -45853 |
| chr12 | 108784493 | 108785071 | E070 | -13802 |
| chr12 | 108787678 | 108787770 | E070 | -11103 |
| chr12 | 108787975 | 108788517 | E070 | -10356 |
| chr12 | 108788582 | 108788879 | E070 | -9994 |
| chr12 | 108792846 | 108792909 | E070 | -5964 |
| chr12 | 108793164 | 108793244 | E070 | -5629 |
| chr12 | 108793884 | 108794031 | E070 | -4842 |
| chr12 | 108794290 | 108794526 | E070 | -4347 |
| chr12 | 108794648 | 108794706 | E070 | -4167 |
| chr12 | 108795022 | 108795088 | E070 | -3785 |
| chr12 | 108795847 | 108795973 | E070 | -2900 |
| chr12 | 108801648 | 108801785 | E070 | 2775 |
| chr12 | 108802295 | 108802345 | E070 | 3422 |
| chr12 | 108803020 | 108803082 | E070 | 4147 |
| chr12 | 108803182 | 108803710 | E070 | 4309 |
| chr12 | 108804336 | 108804420 | E070 | 5463 |
| chr12 | 108805097 | 108805182 | E070 | 6224 |
| chr12 | 108805584 | 108805640 | E070 | 6711 |
| chr12 | 108808705 | 108808770 | E070 | 9832 |
| chr12 | 108835235 | 108835772 | E070 | 36362 |
| chr12 | 108835782 | 108836370 | E070 | 36909 |
| chr12 | 108840538 | 108840898 | E070 | 41665 |
| chr12 | 108840933 | 108841666 | E070 | 42060 |
| chr12 | 108841837 | 108841953 | E070 | 42964 |
| chr12 | 108842098 | 108842243 | E070 | 43225 |
| chr12 | 108793164 | 108793244 | E071 | -5629 |
| chr12 | 108793302 | 108793564 | E071 | -5309 |
| chr12 | 108793571 | 108793686 | E071 | -5187 |
| chr12 | 108793164 | 108793244 | E072 | -5629 |
| chr12 | 108793302 | 108793564 | E072 | -5309 |
| chr12 | 108793164 | 108793244 | E073 | -5629 |
| chr12 | 108793302 | 108793564 | E073 | -5309 |
| chr12 | 108793571 | 108793686 | E073 | -5187 |
| chr12 | 108840933 | 108841666 | E073 | 42060 |
| chr12 | 108793164 | 108793244 | E074 | -5629 |
| chr12 | 108793302 | 108793564 | E074 | -5309 |
| chr12 | 108793571 | 108793686 | E074 | -5187 |
| chr12 | 108793884 | 108794031 | E074 | -4842 |
| chr12 | 108787975 | 108788517 | E081 | -10356 |
| chr12 | 108788582 | 108788879 | E081 | -9994 |
| chr12 | 108793164 | 108793244 | E081 | -5629 |
| chr12 | 108793302 | 108793564 | E081 | -5309 |
| chr12 | 108793571 | 108793686 | E081 | -5187 |
| chr12 | 108793884 | 108794031 | E081 | -4842 |
| chr12 | 108794290 | 108794526 | E081 | -4347 |
| chr12 | 108794648 | 108794706 | E081 | -4167 |
| chr12 | 108804336 | 108804420 | E081 | 5463 |
| chr12 | 108805097 | 108805182 | E081 | 6224 |
| chr12 | 108840183 | 108840531 | E081 | 41310 |
| chr12 | 108840538 | 108840898 | E081 | 41665 |
| chr12 | 108787325 | 108787369 | E082 | -11504 |
| chr12 | 108787678 | 108787770 | E082 | -11103 |
| chr12 | 108787975 | 108788517 | E082 | -10356 |
| chr12 | 108788582 | 108788879 | E082 | -9994 |
| chr12 | 108792846 | 108792909 | E082 | -5964 |
| chr12 | 108793164 | 108793244 | E082 | -5629 |
| chr12 | 108793302 | 108793564 | E082 | -5309 |
| chr12 | 108793571 | 108793686 | E082 | -5187 |
| chr12 | 108793884 | 108794031 | E082 | -4842 |
| chr12 | 108794290 | 108794526 | E082 | -4347 |
| Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
|---|---|---|---|---|
| chr12 | 108822642 | 108822738 | E081 | 23769 |