Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 1 | NC_000001.11:g.10598145G>A |
GRCh37.p13 chr 1 | NC_000001.10:g.10658202G>A |
PEX14 RefSeqGene | NG_008340.1:g.128200G>A |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
PEX14 transcript | NM_004565.2:c. | N/A | Intron Variant |
PEX14 transcript variant X5 | XM_005263470.4:c. | N/A | Intron Variant |
PEX14 transcript variant X1 | XM_011541577.2:c. | N/A | Intron Variant |
PEX14 transcript variant X2 | XM_011541578.2:c. | N/A | Intron Variant |
PEX14 transcript variant X3 | XM_011541579.2:c. | N/A | Intron Variant |
PEX14 transcript variant X4 | XM_011541580.1:c. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.994 | A=0.006 |
1000Genomes | American | Sub | 694 | G=0.940 | A=0.060 |
1000Genomes | East Asian | Sub | 1008 | G=0.999 | A=0.001 |
1000Genomes | Europe | Sub | 1006 | G=0.878 | A=0.122 |
1000Genomes | Global | Study-wide | 5008 | G=0.932 | A=0.068 |
1000Genomes | South Asian | Sub | 978 | G=0.830 | A=0.170 |
The Genome Aggregation Database | African | Sub | 8724 | G=0.982 | A=0.018 |
The Genome Aggregation Database | American | Sub | 838 | G=0.930 | A=0.070 |
The Genome Aggregation Database | East Asian | Sub | 1622 | G=1.000 | A=0.000 |
The Genome Aggregation Database | Europe | Sub | 18444 | G=0.883 | A=0.116 |
The Genome Aggregation Database | Global | Study-wide | 29928 | G=0.919 | A=0.080 |
The Genome Aggregation Database | Other | Sub | 300 | G=0.820 | A=0.180 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.934 | A=0.065 |
PMID | Title | Author | Journal |
---|---|---|---|
24962325 | Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families. | Kapoor M | Drug Alcohol Depend |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs11121598 | 3.76E-06 | alcohol dependence (age at onset) | 24962325 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr1 | 10674618 | 10674691 | E067 | 16416 |
chr1 | 10676080 | 10676130 | E067 | 17878 |
chr1 | 10676190 | 10676279 | E067 | 17988 |
chr1 | 10619744 | 10619845 | E068 | -38357 |
chr1 | 10658122 | 10658519 | E068 | 0 |
chr1 | 10674618 | 10674691 | E068 | 16416 |
chr1 | 10608343 | 10608589 | E069 | -49613 |
chr1 | 10674618 | 10674691 | E069 | 16416 |
chr1 | 10676080 | 10676130 | E069 | 17878 |
chr1 | 10676190 | 10676279 | E069 | 17988 |
chr1 | 10639682 | 10639816 | E070 | -18386 |
chr1 | 10657285 | 10657517 | E070 | -685 |
chr1 | 10657636 | 10657777 | E070 | -425 |
chr1 | 10657802 | 10657902 | E070 | -300 |
chr1 | 10658122 | 10658519 | E070 | 0 |
chr1 | 10658521 | 10658674 | E070 | 319 |
chr1 | 10658819 | 10658900 | E070 | 617 |
chr1 | 10659286 | 10659975 | E070 | 1084 |
chr1 | 10675435 | 10675632 | E070 | 17233 |
chr1 | 10676080 | 10676130 | E070 | 17878 |
chr1 | 10676190 | 10676279 | E070 | 17988 |
chr1 | 10676383 | 10676433 | E070 | 18181 |
chr1 | 10683745 | 10683802 | E070 | 25543 |
chr1 | 10692059 | 10692263 | E070 | 33857 |
chr1 | 10692491 | 10692700 | E070 | 34289 |
chr1 | 10692869 | 10693116 | E070 | 34667 |
chr1 | 10694645 | 10695194 | E070 | 36443 |
chr1 | 10695242 | 10696319 | E070 | 37040 |
chr1 | 10699890 | 10700675 | E070 | 41688 |
chr1 | 10700718 | 10700866 | E070 | 42516 |
chr1 | 10700912 | 10701033 | E070 | 42710 |
chr1 | 10701085 | 10701135 | E070 | 42883 |
chr1 | 10701359 | 10701479 | E070 | 43157 |
chr1 | 10619540 | 10619590 | E071 | -38612 |
chr1 | 10619744 | 10619845 | E071 | -38357 |
chr1 | 10658122 | 10658519 | E071 | 0 |
chr1 | 10658521 | 10658674 | E071 | 319 |
chr1 | 10674173 | 10674224 | E071 | 15971 |
chr1 | 10674618 | 10674691 | E071 | 16416 |
chr1 | 10675435 | 10675632 | E071 | 17233 |
chr1 | 10676080 | 10676130 | E071 | 17878 |
chr1 | 10676190 | 10676279 | E071 | 17988 |
chr1 | 10694645 | 10695194 | E071 | 36443 |
chr1 | 10695242 | 10696319 | E071 | 37040 |
chr1 | 10700718 | 10700866 | E071 | 42516 |
chr1 | 10700912 | 10701033 | E071 | 42710 |
chr1 | 10701085 | 10701135 | E071 | 42883 |
chr1 | 10615676 | 10616715 | E072 | -41487 |
chr1 | 10619540 | 10619590 | E072 | -38612 |
chr1 | 10619744 | 10619845 | E072 | -38357 |
chr1 | 10658122 | 10658519 | E072 | 0 |
chr1 | 10674618 | 10674691 | E072 | 16416 |
chr1 | 10676080 | 10676130 | E072 | 17878 |
chr1 | 10676190 | 10676279 | E072 | 17988 |
chr1 | 10658122 | 10658519 | E073 | 0 |
chr1 | 10694645 | 10695194 | E073 | 36443 |
chr1 | 10619744 | 10619845 | E074 | -38357 |
chr1 | 10658122 | 10658519 | E074 | 0 |
chr1 | 10674618 | 10674691 | E074 | 16416 |
chr1 | 10672536 | 10673120 | E081 | 14334 |
chr1 | 10675435 | 10675632 | E081 | 17233 |
chr1 | 10676080 | 10676130 | E081 | 17878 |
chr1 | 10676190 | 10676279 | E081 | 17988 |
chr1 | 10676383 | 10676433 | E081 | 18181 |
chr1 | 10695242 | 10696319 | E081 | 37040 |
chr1 | 10699890 | 10700675 | E081 | 41688 |
chr1 | 10700718 | 10700866 | E081 | 42516 |
chr1 | 10700912 | 10701033 | E081 | 42710 |
chr1 | 10615552 | 10615650 | E082 | -42552 |
chr1 | 10615676 | 10616715 | E082 | -41487 |
chr1 | 10652230 | 10652294 | E082 | -5908 |
chr1 | 10675435 | 10675632 | E082 | 17233 |
chr1 | 10694645 | 10695194 | E082 | 36443 |
chr1 | 10695242 | 10696319 | E082 | 37040 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr1 | 10698813 | 10698918 | E070 | 40611 |
chr1 | 10698970 | 10699106 | E070 | 40768 |
chr1 | 10699129 | 10699276 | E070 | 40927 |
chr1 | 10698304 | 10698417 | E082 | 40102 |
chr1 | 10698437 | 10698582 | E082 | 40235 |
chr1 | 10698617 | 10698657 | E082 | 40415 |
chr1 | 10698725 | 10698803 | E082 | 40523 |
chr1 | 10698813 | 10698918 | E082 | 40611 |
chr1 | 10698970 | 10699106 | E082 | 40768 |
chr1 | 10699129 | 10699276 | E082 | 40927 |