| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 3 | NC_000003.12:g.20334054A>G |
| GRCh37.p13 chr 3 | NC_000003.11:g.20375546A>G |
| GRCh38.p7 chr 3 alt locus HSCHR3_3_CTG1 | NT_187535.1:g.60639A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.868 | G=0.132 |
| 1000Genomes | American | Sub | 694 | A=0.800 | G=0.200 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.652 | G=0.348 |
| 1000Genomes | Europe | Sub | 1006 | A=0.811 | G=0.189 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.781 | G=0.219 |
| 1000Genomes | South Asian | Sub | 978 | A=0.750 | G=0.250 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.796 | G=0.204 |
| The Genome Aggregation Database | African | Sub | 8698 | A=0.851 | G=0.149 |
| The Genome Aggregation Database | American | Sub | 836 | A=0.700 | G=0.300 |
| The Genome Aggregation Database | East Asian | Sub | 1608 | A=0.642 | G=0.358 |
| The Genome Aggregation Database | Europe | Sub | 18452 | A=0.793 | G=0.206 |
| The Genome Aggregation Database | Global | Study-wide | 29896 | A=0.800 | G=0.199 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.860 | G=0.140 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29116 | A=0.810 | G=0.189 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.797 | G=0.203 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 23953852 | Genome-wide association studies of maximum number of drinks. | Pan Y | J Psychiatr Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs11128951 | 4.27E-08 | alcohol consumption | 23953852 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr3 | 20357705 | 20357999 | E068 | -17547 |
| chr3 | 20357705 | 20357999 | E069 | -17547 |
| chr3 | 20358312 | 20358480 | E069 | -17066 |
| chr3 | 20357705 | 20357999 | E071 | -17547 |
| chr3 | 20358312 | 20358480 | E071 | -17066 |
| chr3 | 20357705 | 20357999 | E072 | -17547 |
| chr3 | 20358312 | 20358480 | E074 | -17066 |
| chr3 | 20344286 | 20344584 | E081 | -30962 |