SNP Detail Info-rs111325002

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0007 (232/29924,GnomAD)
G=0014 (409/29118,TOPMED)
G=0010 (52/5008,1000G)
G=0001 (2/3854,ALSPAC)
G=0001 (2/3708,TWINSUK)

Position: chr3:96134788 (GRCh38.p7) (3q11.2)

Phenotype: CD

Dataset:

GWASdb2 | GWASCatalog

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 3	NC_000003.12:g.96134788A>G
GRCh37.p13 chr 3	NC_000003.11:g.95853632A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.962	G=0.038
1000Genomes	American	Sub	694	A=1.000	G=0.000
1000Genomes	East Asian	Sub	1008	A=1.000	G=0.000
1000Genomes	Europe	Sub	1006	A=1.000	G=0.000
1000Genomes	Global	Study-wide	5008	A=0.990	G=0.010
1000Genomes	South Asian	Sub	978	A=1.000	G=0.000
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.999	G=0.001
The Genome Aggregation Database	African	Sub	8720	A=0.974	G=0.026
The Genome Aggregation Database	American	Sub	838	A=1.000	G=0.000
The Genome Aggregation Database	East Asian	Sub	1574	A=1.000	G=0.000
The Genome Aggregation Database	Europe	Sub	18490	A=0.999	G=0.000
The Genome Aggregation Database	Global	Study-wide	29924	A=0.992	G=0.007
The Genome Aggregation Database	Other	Sub	302	A=1.000	G=0.000
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.986	G=0.014
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.999	G=0.001

PMID	Title	Author	Journal
23958962	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Gelernter J	Mol Psychiatry

SNP ID	p-value	Traits	Study
rs111325002	4E-07	cocaine dependence	23958962

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs111325002