rs111325002

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0007 (232/29924,GnomAD)
G=0014 (409/29118,TOPMED)
G=0010 (52/5008,1000G)
G=0001 (2/3854,ALSPAC)
G=0001 (2/3708,TWINSUK)
chr3:96134788 (GRCh38.p7) (3q11.2)
CD
GWASdb2 | GWASCatalog
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.96134788A>G
GRCh37.p13 chr 3NC_000003.11:g.95853632A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.962G=0.038
1000GenomesAmericanSub694A=1.000G=0.000
1000GenomesEast AsianSub1008A=1.000G=0.000
1000GenomesEuropeSub1006A=1.000G=0.000
1000GenomesGlobalStudy-wide5008A=0.990G=0.010
1000GenomesSouth AsianSub978A=1.000G=0.000
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.999G=0.001
The Genome Aggregation DatabaseAfricanSub8720A=0.974G=0.026
The Genome Aggregation DatabaseAmericanSub838A=1.000G=0.000
The Genome Aggregation DatabaseEast AsianSub1574A=1.000G=0.000
The Genome Aggregation DatabaseEuropeSub18490A=0.999G=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29924A=0.992G=0.007
The Genome Aggregation DatabaseOtherSub302A=1.000G=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.986G=0.014
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.999G=0.001
PMID Title Author Journal
23958962Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.Gelernter JMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs1113250024E-07cocaine dependence23958962

eQTL of rs111325002 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs111325002 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.