SNP Detail Info-rs11134474

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

SGCD : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0044 (1315/29912,GnomAD)
G=0059 (1726/29118,TOPMED)
G=0061 (307/5008,1000G)
G=0010 (40/3854,ALSPAC)
G=0009 (34/3708,TWINSUK)

Position: chr5:155775518 (GRCh38.p7) (5q33.2)

Phenotype: ND

Dataset:

GWASCatalog

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 1 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 5	NC_000005.10:g.155775518A>G
GRCh37.p13 chr 5	NC_000005.9:g.155202528A>G

Molecule type	Change	Amino acid[Codon]	SO Term
SGCD transcript variant 1	NM_000337.5:c.	N/A	Genic Upstream Transcript Variant
SGCD transcript variant 3	NM_001128209.1:c.	N/A	Genic Upstream Transcript Variant
SGCD transcript variant 2	NM_172244.2:c.	N/A	Genic Upstream Transcript Variant
SGCD transcript variant X2	XM_017009724.1:c.	N/A	Intron Variant
SGCD transcript variant X3	XM_005265966.4:c.	N/A	Genic Upstream Transcript Variant
SGCD transcript variant X5	XM_005265967.2:c.	N/A	Genic Upstream Transcript Variant
SGCD transcript variant X4	XM_011534621.2:c.	N/A	Genic Upstream Transcript Variant
SGCD transcript variant X1	XM_017009723.1:c.	N/A	Genic Upstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.884	G=0.116
1000Genomes	American	Sub	694	A=0.970	G=0.030
1000Genomes	East Asian	Sub	1008	A=0.932	G=0.068
1000Genomes	Europe	Sub	1006	A=0.984	G=0.016
1000Genomes	Global	Study-wide	5008	A=0.939	G=0.061
1000Genomes	South Asian	Sub	978	A=0.950	G=0.050
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.990	G=0.010
The Genome Aggregation Database	African	Sub	8700	A=0.882	G=0.118
The Genome Aggregation Database	American	Sub	836	A=0.970	G=0.030
The Genome Aggregation Database	East Asian	Sub	1584	A=0.956	G=0.044
The Genome Aggregation Database	Europe	Sub	18490	A=0.990	G=0.009
The Genome Aggregation Database	Global	Study-wide	29912	A=0.956	G=0.044
The Genome Aggregation Database	Other	Sub	302	A=0.940	G=0.060
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.940	G=0.059
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.991	G=0.009

PMID	Title	Author	Journal
22006218	Large-scale genome-wide association study of Asian population reveals genetic factors in FRMD4A and other loci influencing smoking initiation and nicotine dependence.	Yoon D	Hum Genet

SNP ID	p-value	Traits	Study
rs11134474	8E-06	Smoking behavior	22006218

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs11134474