Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 8 | NC_000008.11:g.581083A>C |
GRCh37.p13 chr 8 | NC_000008.10:g.531083A>C |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | A=0.915 | C=0.085 |
1000Genomes | American | Sub | 694 | A=0.830 | C=0.170 |
1000Genomes | East Asian | Sub | 1008 | A=0.885 | C=0.115 |
1000Genomes | Europe | Sub | 1006 | A=0.767 | C=0.233 |
1000Genomes | Global | Study-wide | 5008 | A=0.838 | C=0.162 |
1000Genomes | South Asian | Sub | 978 | A=0.760 | C=0.240 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.774 | C=0.226 |
The Genome Aggregation Database | African | Sub | 8716 | A=0.882 | C=0.118 |
The Genome Aggregation Database | American | Sub | 836 | A=0.840 | C=0.160 |
The Genome Aggregation Database | East Asian | Sub | 1620 | A=0.893 | C=0.107 |
The Genome Aggregation Database | Europe | Sub | 18446 | A=0.780 | C=0.220 |
The Genome Aggregation Database | Global | Study-wide | 29920 | A=0.816 | C=0.184 |
The Genome Aggregation Database | Other | Sub | 302 | A=0.630 | C=0.370 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.815 | C=0.184 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.777 | C=0.223 |
PMID | Title | Author | Journal |
---|---|---|---|
24277619 | ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample. | Quillen EE | Am J Med Genet B Neuropsychiatr Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs11136864 | 0.000207 | alcohol dependence | 24277619 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value |
---|---|---|---|---|
cg00837987 | chr8:588849 | -0.0814079562539067 | 5.2392e-16 | |
cg01142096 | chr8:682091 | ERICH1 | -0.0686847660811244 | 1.5448e-14 |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr8 | 564865 | 565802 | E067 | 33782 |
chr8 | 486737 | 487272 | E068 | -43811 |
chr8 | 487293 | 487385 | E068 | -43698 |
chr8 | 487524 | 487646 | E068 | -43437 |
chr8 | 487689 | 487818 | E068 | -43265 |
chr8 | 551870 | 551933 | E068 | 20787 |
chr8 | 564865 | 565802 | E068 | 33782 |
chr8 | 564865 | 565802 | E069 | 33782 |
chr8 | 549565 | 549665 | E070 | 18482 |
chr8 | 549836 | 549935 | E070 | 18753 |
chr8 | 550024 | 550064 | E070 | 18941 |
chr8 | 551584 | 551714 | E070 | 20501 |
chr8 | 551747 | 551787 | E070 | 20664 |
chr8 | 564865 | 565802 | E071 | 33782 |
chr8 | 551747 | 551787 | E072 | 20664 |
chr8 | 492022 | 492072 | E073 | -39011 |
chr8 | 550340 | 550645 | E074 | 19257 |
chr8 | 550676 | 550932 | E074 | 19593 |
chr8 | 564865 | 565802 | E074 | 33782 |
chr8 | 565983 | 566084 | E074 | 34900 |
chr8 | 566126 | 566176 | E074 | 35043 |
chr8 | 496877 | 497286 | E081 | -33797 |
chr8 | 575687 | 576336 | E081 | 44604 |
chr8 | 576886 | 576943 | E081 | 45803 |
chr8 | 576970 | 577161 | E081 | 45887 |
chr8 | 577211 | 577278 | E081 | 46128 |
chr8 | 577373 | 577469 | E081 | 46290 |
chr8 | 575687 | 576336 | E082 | 44604 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr8 | 493589 | 496797 | E067 | -34286 |
chr8 | 493589 | 496797 | E068 | -34286 |
chr8 | 493589 | 496797 | E069 | -34286 |
chr8 | 493589 | 496797 | E070 | -34286 |
chr8 | 493589 | 496797 | E071 | -34286 |
chr8 | 493589 | 496797 | E072 | -34286 |
chr8 | 493589 | 496797 | E073 | -34286 |
chr8 | 493589 | 496797 | E074 | -34286 |
chr8 | 493589 | 496797 | E082 | -34286 |