rs11138552

Homo sapiens
C>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0120 (3612/29954,GnomAD)
A=0099 (2898/29118,TOPMED)
A=0071 (357/5008,1000G)
A=0159 (612/3854,ALSPAC)
A=0168 (622/3708,TWINSUK)
chr9:80201820 (GRCh38.p7) (9q21.31)
AD
GWASdb2
1   publication(s)
See rs on genome
14 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.80201820C>A
GRCh37.p13 chr 9NC_000009.11:g.82816735C>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.957A=0.043
1000GenomesAmericanSub694C=0.900A=0.100
1000GenomesEast AsianSub1008C=0.999A=0.001
1000GenomesEuropeSub1006C=0.839A=0.161
1000GenomesGlobalStudy-wide5008C=0.929A=0.071
1000GenomesSouth AsianSub978C=0.930A=0.070
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.841A=0.159
The Genome Aggregation DatabaseAfricanSub8718C=0.943A=0.057
The Genome Aggregation DatabaseAmericanSub836C=0.900A=0.100
The Genome Aggregation DatabaseEast AsianSub1620C=0.999A=0.001
The Genome Aggregation DatabaseEuropeSub18480C=0.838A=0.162
The Genome Aggregation DatabaseGlobalStudy-wide29954C=0.879A=0.120
The Genome Aggregation DatabaseOtherSub300C=0.890A=0.110
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.900A=0.099
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.832A=0.168
PMID Title Author Journal
23953852Genome-wide association studies of maximum number of drinks.Pan YJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs111385523.72E-05alcohol consumption23953852

eQTL of rs11138552 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11138552 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr98277356582774172E068-42563
chr98277177482773115E070-43620
chr98277316182773374E070-43361
chr98277338882773483E070-43252
chr98277356582774172E070-42563
chr98284836782848427E07031632
chr98284854282848696E07031807
chr98284890782849008E07032172
chr98284890782849008E07132172
chr98284933782849669E07132602
chr98277177482773115E082-43620
chr98277316182773374E082-43361
chr98277338882773483E082-43252
chr98277356582774172E082-42563