SNP Detail Info-rs11144480

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0080 (2418/29962,GnomAD)
A=0114 (3318/29118,TOPMED)
A=0117 (587/5008,1000G)
A=0051 (195/3854,ALSPAC)
A=0052 (192/3708,TWINSUK)

Position: chr9:75543369 (GRCh38.p7) (9q21.13)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 2 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 9	NC_000009.12:g.75543369G>A
GRCh37.p13 chr 9	NC_000009.11:g.78158285G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.831	A=0.169
1000Genomes	American	Sub	694	G=0.920	A=0.080
1000Genomes	East Asian	Sub	1008	G=0.853	A=0.147
1000Genomes	Europe	Sub	1006	G=0.943	A=0.057
1000Genomes	Global	Study-wide	5008	G=0.883	A=0.117
1000Genomes	South Asian	Sub	978	G=0.900	A=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.949	A=0.051
The Genome Aggregation Database	African	Sub	8718	G=0.864	A=0.136
The Genome Aggregation Database	American	Sub	838	G=0.910	A=0.090
The Genome Aggregation Database	East Asian	Sub	1622	G=0.848	A=0.152
The Genome Aggregation Database	Europe	Sub	18482	G=0.952	A=0.047
The Genome Aggregation Database	Global	Study-wide	29962	G=0.919	A=0.080
The Genome Aggregation Database	Other	Sub	302	G=0.880	A=0.120
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.886	A=0.114
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.948	A=0.052

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs11144480	0.00098	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr9	78206914	78207255	E081	48629
chr9	78207601	78208023	E081	49316

rs11144480