rs11145948

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0431 (12889/29892,GnomAD)
A=0378 (11025/29118,TOPMED)
A=0344 (1723/5008,1000G)
G==0482 (1859/3854,ALSPAC)
G==0481 (1782/3708,TWINSUK)
chr9:136963460 (GRCh38.p7) (9q34.3)
AD
GWASdb2
1   publication(s)
See rs on genome

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.136963460G>A
GRCh37.p13 chr 9NC_000009.11:g.139857912G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.824A=0.176
1000GenomesAmericanSub694G=0.440A=0.560
1000GenomesEast AsianSub1008G=0.832A=0.168
1000GenomesEuropeSub1006G=0.481A=0.519
1000GenomesGlobalStudy-wide5008G=0.656A=0.344
1000GenomesSouth AsianSub978G=0.580A=0.420
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.482A=0.518
The Genome Aggregation DatabaseAfricanSub8714G=0.753A=0.247
The Genome Aggregation DatabaseAmericanSub838G=0.450A=0.550
The Genome Aggregation DatabaseEast AsianSub1614G=0.859A=0.141
The Genome Aggregation DatabaseEuropeSub18424G=0.461A=0.538
The Genome Aggregation DatabaseGlobalStudy-wide29892G=0.568A=0.431
The Genome Aggregation DatabaseOtherSub302G=0.610A=0.390
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.621A=0.378
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.481A=0.519
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs111459480.000252alcohol dependence21314694

eQTL of rs11145948 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
Chr9:139857912C9orf142ENSG00000148362.6G>A2.3000e-27-28958Cerebellum

meQTL of rs11145948 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr9139822692139823185E067-34727
chr9139831166139831291E067-26621
chr9139831314139831364E067-26548
chr9139831685139831739E067-26173
chr9139831912139831960E067-25952
chr9139832039139832099E067-25813
chr9139832148139832303E067-25609
chr9139834527139835206E067-22706
chr9139841423139842961E067-14951
chr9139843141139843217E067-14695
chr9139843400139843477E067-14435
chr9139855584139856155E067-1757
chr9139856243139856392E067-1520
chr9139856495139856762E067-1150
chr9139856936139857011E067-901
chr9139857247139857550E067-362
chr9139857556139857626E067-286
chr9139857648139857814E067-98
chr9139857921139858156E0679
chr9139858196139858318E067284
chr9139858567139858633E067655
chr9139858825139859134E067913
chr9139859210139859275E0671298
chr9139859393139859495E0671481
chr9139859543139859771E0671631
chr9139859858139859906E0671946
chr9139860018139860069E0672106
chr9139869297139869791E06711385
chr9139869795139870667E06711883
chr9139870709139870777E06712797
chr9139870845139870946E06712933
chr9139870984139871077E06713072
chr9139871188139871242E06713276
chr9139871310139871373E06713398
chr9139874272139874425E06716360
chr9139874442139874545E06716530
chr9139874550139874676E06716638
chr9139874682139875067E06716770
chr9139875076139875135E06717164
chr9139875164139875291E06717252
chr9139875350139875493E06717438
chr9139875507139875685E06717595
chr9139878043139878255E06720131
chr9139878256139878325E06720344
chr9139878331139878511E06720419
chr9139878538139878634E06720626
chr9139878737139878882E06720825
chr9139817455139817557E068-40355
chr9139833910139834241E068-23671
chr9139834283139834380E068-23532
chr9139834527139835206E068-22706
chr9139841423139842961E068-14951
chr9139843141139843217E068-14695
chr9139843400139843477E068-14435
chr9139845505139845662E068-12250
chr9139855584139856155E068-1757
chr9139856243139856392E068-1520
chr9139857247139857550E068-362
chr9139857556139857626E068-286
chr9139857648139857814E068-98
chr9139857921139858156E0689
chr9139858825139859134E068913
chr9139869297139869791E06811385
chr9139869795139870667E06811883
chr9139870709139870777E06812797
chr9139870845139870946E06812933
chr9139870984139871077E06813072
chr9139871188139871242E06813276
chr9139871310139871373E06813398
chr9139874059139874225E06816147
chr9139874272139874425E06816360
chr9139874442139874545E06816530
chr9139874550139874676E06816638
chr9139874682139875067E06816770
chr9139875076139875135E06817164
chr9139875164139875291E06817252
chr9139875350139875493E06817438
chr9139875698139875748E06817786
chr9139877050139877145E06819138
chr9139877189139877646E06819277
chr9139877777139877854E06819865
chr9139877865139877909E06819953
chr9139878043139878255E06820131
chr9139878256139878325E06820344
chr9139878331139878511E06820419
chr9139878538139878634E06820626
chr9139878737139878882E06820825
chr9139889893139890006E06831981
chr9139890027139893224E06832115
chr9139901605139902037E06843693
chr9139902313139902492E06844401
chr9139902707139902949E06844795
chr9139834527139835206E069-22706
chr9139835280139835362E069-22550
chr9139837462139837558E069-20354
chr9139841423139842961E069-14951
chr9139843400139843477E069-14435
chr9139855130139855579E069-2333
chr9139855584139856155E069-1757
chr9139856243139856392E069-1520
chr9139856495139856762E069-1150
chr9139856936139857011E069-901
chr9139857247139857550E069-362
chr9139857556139857626E069-286
chr9139857648139857814E069-98
chr9139857921139858156E0699
chr9139858196139858318E069284
chr9139858567139858633E069655
chr9139858825139859134E069913
chr9139859210139859275E0691298
chr9139859393139859495E0691481
chr9139860208139860970E0692296
chr9139869795139870667E06911883
chr9139870709139870777E06912797
chr9139870845139870946E06912933
chr9139870984139871077E06913072
chr9139874272139874425E06916360
chr9139874442139874545E06916530
chr9139874550139874676E06916638
chr9139874682139875067E06916770
chr9139875076139875135E06917164
chr9139875164139875291E06917252
chr9139875350139875493E06917438
chr9139875507139875685E06917595
chr9139878043139878255E06920131
chr9139878256139878325E06920344
chr9139878331139878511E06920419
chr9139878538139878634E06920626
chr9139878737139878882E06920825
chr9139888216139888777E06930304
chr9139900993139901375E06943081
chr9139901605139902037E06943693
chr9139902313139902492E06944401
chr9139902707139902949E06944795
chr9139903997139904046E06946085
chr9139904144139904300E06946232
chr9139904309139904420E06946397
chr9139904432139904540E06946520
chr9139904585139904635E06946673
chr9139904655139904784E06946743
chr9139905112139905280E06947200
chr9139905373139905445E06947461
chr9139837306139837399E070-20513
chr9139837462139837558E070-20354
chr9139888216139888777E07030304
chr9139888841139888938E07030929
chr9139888963139889081E07031051
chr9139889893139890006E07031981
chr9139890027139893224E07032115
chr9139900993139901375E07043081
chr9139901605139902037E07043693
chr9139902313139902492E07044401
chr9139833910139834241E071-23671
chr9139834283139834380E071-23532
chr9139834527139835206E071-22706
chr9139835280139835362E071-22550
chr9139835401139835882E071-22030
chr9139836519139837290E071-20622
chr9139837306139837399E071-20513
chr9139841423139842961E071-14951
chr9139843141139843217E071-14695
chr9139843400139843477E071-14435
chr9139855584139856155E071-1757
chr9139856243139856392E071-1520
chr9139856495139856762E071-1150
chr9139856936139857011E071-901
chr9139857247139857550E071-362
chr9139857556139857626E071-286
chr9139857648139857814E071-98
chr9139857921139858156E0719
chr9139858196139858318E071284
chr9139858567139858633E071655
chr9139858825139859134E071913
chr9139860208139860970E0712296
chr9139869297139869791E07111385
chr9139869795139870667E07111883
chr9139870709139870777E07112797
chr9139870845139870946E07112933
chr9139870984139871077E07113072
chr9139871188139871242E07113276
chr9139871310139871373E07113398
chr9139874682139875067E07116770
chr9139875076139875135E07117164
chr9139875164139875291E07117252
chr9139875350139875493E07117438
chr9139875507139875685E07117595
chr9139875698139875748E07117786
chr9139875878139875970E07117966
chr9139876002139876336E07118090
chr9139876461139876511E07118549
chr9139876582139876688E07118670
chr9139876770139877005E07118858
chr9139877050139877145E07119138
chr9139877189139877646E07119277
chr9139877777139877854E07119865
chr9139877865139877909E07119953
chr9139878043139878255E07120131
chr9139878256139878325E07120344
chr9139878331139878511E07120419
chr9139878538139878634E07120626
chr9139878737139878882E07120825
chr9139888216139888777E07130304
chr9139889893139890006E07131981
chr9139890027139893224E07132115
chr9139900993139901375E07143081
chr9139901605139902037E07143693
chr9139902313139902492E07144401
chr9139902707139902949E07144795
chr9139903997139904046E07146085
chr9139904144139904300E07146232
chr9139904309139904420E07146397
chr9139904432139904540E07146520
chr9139904585139904635E07146673
chr9139906159139906209E07148247
chr9139906339139906389E07148427
chr9139906463139906575E07148551
chr9139906596139906656E07148684
chr9139906862139906947E07148950
chr9139906984139907034E07149072
chr9139907244139907299E07149332
chr9139907323139907367E07149411
chr9139810691139810817E072-47095
chr9139810835139810885E072-47027
chr9139810940139811075E072-46837
chr9139831166139831291E072-26621
chr9139831314139831364E072-26548
chr9139831685139831739E072-26173
chr9139831912139831960E072-25952
chr9139832039139832099E072-25813
chr9139832148139832303E072-25609
chr9139832341139832574E072-25338
chr9139833910139834241E072-23671
chr9139834283139834380E072-23532
chr9139834527139835206E072-22706
chr9139835280139835362E072-22550
chr9139837462139837558E072-20354
chr9139840062139841383E072-16529
chr9139841423139842961E072-14951
chr9139845505139845662E072-12250
chr9139845698139845787E072-12125
chr9139845872139846040E072-11872
chr9139846153139846277E072-11635
chr9139855130139855579E072-2333
chr9139855584139856155E072-1757
chr9139856243139856392E072-1520
chr9139856495139856762E072-1150
chr9139856936139857011E072-901
chr9139857247139857550E072-362
chr9139857556139857626E072-286
chr9139857648139857814E072-98
chr9139857921139858156E0729
chr9139858196139858318E072284
chr9139869297139869791E07211385
chr9139869795139870667E07211883
chr9139870709139870777E07212797
chr9139870845139870946E07212933
chr9139870984139871077E07213072
chr9139871188139871242E07213276
chr9139871310139871373E07213398
chr9139874272139874425E07216360
chr9139874442139874545E07216530
chr9139874550139874676E07216638
chr9139874682139875067E07216770
chr9139875076139875135E07217164
chr9139875164139875291E07217252
chr9139875350139875493E07217438
chr9139875507139875685E07217595
chr9139875698139875748E07217786
chr9139877050139877145E07219138
chr9139877189139877646E07219277
chr9139877777139877854E07219865
chr9139877865139877909E07219953
chr9139878043139878255E07220131
chr9139878256139878325E07220344
chr9139878331139878511E07220419
chr9139878538139878634E07220626
chr9139878737139878882E07220825
chr9139889893139890006E07231981
chr9139890027139893224E07232115
chr9139900993139901375E07243081
chr9139901605139902037E07243693
chr9139902313139902492E07244401
chr9139902707139902949E07244795
chr9139822692139823185E073-34727
chr9139831912139831960E073-25952
chr9139832039139832099E073-25813
chr9139832148139832303E073-25609
chr9139832341139832574E073-25338
chr9139834283139834380E073-23532
chr9139834527139835206E073-22706
chr9139835280139835362E073-22550
chr9139835401139835882E073-22030
chr9139836007139836083E073-21829
chr9139836148139836223E073-21689
chr9139836301139836476E073-21436
chr9139836519139837290E073-20622
chr9139837306139837399E073-20513
chr9139837462139837558E073-20354
chr9139841423139842961E073-14951
chr9139843141139843217E073-14695
chr9139843400139843477E073-14435
chr9139845505139845662E073-12250
chr9139845698139845787E073-12125
chr9139845872139846040E073-11872
chr9139846153139846277E073-11635
chr9139853549139853622E073-4290
chr9139853662139853731E073-4181
chr9139853766139853922E073-3990
chr9139855584139856155E073-1757
chr9139856243139856392E073-1520
chr9139856495139856762E073-1150
chr9139856936139857011E073-901
chr9139857247139857550E073-362
chr9139858196139858318E073284
chr9139863342139863427E0735430
chr9139863436139863480E0735524
chr9139863560139863633E0735648
chr9139867372139867441E0739460
chr9139867788139867893E0739876
chr9139869297139869791E07311385
chr9139869795139870667E07311883
chr9139870709139870777E07312797
chr9139870845139870946E07312933
chr9139870984139871077E07313072
chr9139871188139871242E07313276
chr9139871310139871373E07313398
chr9139874550139874676E07316638
chr9139874682139875067E07316770
chr9139875076139875135E07317164
chr9139875164139875291E07317252
chr9139875350139875493E07317438
chr9139875507139875685E07317595
chr9139875698139875748E07317786
chr9139875878139875970E07317966
chr9139876770139877005E07318858
chr9139877050139877145E07319138
chr9139877189139877646E07319277
chr9139877777139877854E07319865
chr9139877865139877909E07319953
chr9139878043139878255E07320131
chr9139878256139878325E07320344
chr9139878331139878511E07320419
chr9139878538139878634E07320626
chr9139878737139878882E07320825
chr9139889893139890006E07331981
chr9139900993139901375E07343081
chr9139901605139902037E07343693
chr9139902313139902492E07344401
chr9139902707139902949E07344795
chr9139834527139835206E074-22706
chr9139835280139835362E074-22550
chr9139837306139837399E074-20513
chr9139837462139837558E074-20354
chr9139841423139842961E074-14951
chr9139843141139843217E074-14695
chr9139843400139843477E074-14435
chr9139855584139856155E074-1757
chr9139856243139856392E074-1520
chr9139857247139857550E074-362
chr9139857556139857626E074-286
chr9139857648139857814E074-98
chr9139857921139858156E0749
chr9139858196139858318E074284
chr9139869795139870667E07411883
chr9139870845139870946E07412933
chr9139870984139871077E07413072
chr9139871188139871242E07413276
chr9139871310139871373E07413398
chr9139874059139874225E07416147
chr9139874272139874425E07416360
chr9139874442139874545E07416530
chr9139874550139874676E07416638
chr9139874682139875067E07416770
chr9139875076139875135E07417164
chr9139875164139875291E07417252
chr9139875350139875493E07417438
chr9139875507139875685E07417595
chr9139875698139875748E07417786
chr9139876770139877005E07418858
chr9139877050139877145E07419138
chr9139877189139877646E07419277
chr9139877777139877854E07419865
chr9139877865139877909E07419953
chr9139878043139878255E07420131
chr9139878256139878325E07420344
chr9139878331139878511E07420419
chr9139878538139878634E07420626
chr9139878737139878882E07420825
chr9139902313139902492E07444401
chr9139902707139902949E07444795
chr9139904144139904300E07446232
chr9139904309139904420E07446397
chr9139904432139904540E07446520
chr9139904585139904635E07446673
chr9139904655139904784E07446743
chr9139837306139837399E081-20513
chr9139837462139837558E081-20354
chr9139845505139845662E081-12250
chr9139888216139888777E08130304
chr9139888841139888938E08130929
chr9139888963139889081E08131051
chr9139889893139890006E08131981
chr9139890027139893224E08132115
chr9139888216139888777E08230304
chr9139888841139888938E08230929
chr9139888963139889081E08231051
chr9139889893139890006E08231981










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr9139837656139840035E067-17877
chr9139843512139845441E067-12471
chr9139873765139874052E06715853
chr9139886246139887670E06728334
chr9139837656139840035E068-17877
chr9139843512139845441E068-12471
chr9139873765139874052E06815853
chr9139886246139887670E06828334
chr9139837656139840035E069-17877
chr9139843512139845441E069-12471
chr9139886246139887670E06928334
chr9139837656139840035E070-17877
chr9139843512139845441E070-12471
chr9139886246139887670E07028334
chr9139837656139840035E071-17877
chr9139843512139845441E071-12471
chr9139886246139887670E07128334
chr9139837656139840035E072-17877
chr9139843512139845441E072-12471
chr9139873765139874052E07215853
chr9139886246139887670E07228334
chr9139837656139840035E073-17877
chr9139843512139845441E073-12471
chr9139873765139874052E07315853
chr9139886246139887670E07328334
chr9139837656139840035E074-17877
chr9139843512139845441E074-12471
chr9139873765139874052E07415853
chr9139886246139887670E07428334
chr9139837656139840035E082-17877
chr9139843512139845441E082-12471
chr9139886246139887670E08228334