SNP Detail Info-rs11150518

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

CDH13 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0078 (2359/29940,GnomAD)
G==0058 (1691/29118,TOPMED)
G==0084 (423/5008,1000G)
G==0087 (336/3854,ALSPAC)
G==0085 (317/3708,TWINSUK)

Position: chr16:82896123 (GRCh38.p7) (16q23.3)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 39 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 16	NC_000016.10:g.82896123G>A
GRCh37.p13 chr 16	NC_000016.9:g.82929728G>A

Molecule type	Change	Amino acid[Codon]	SO Term
CDH13 transcript variant 2	NM_001220488.1:c.	N/A	Intron Variant
CDH13 transcript variant 3	NM_001220489.1:c.	N/A	Intron Variant
CDH13 transcript variant 4	NM_001220490.1:c.	N/A	Intron Variant
CDH13 transcript variant 5	NM_001220491.1:c.	N/A	Intron Variant
CDH13 transcript variant 6	NM_001220492.1:c.	N/A	Intron Variant
CDH13 transcript variant 1	NM_001257.4:c.	N/A	Intron Variant
CDH13 transcript variant X2	XM_017022848.1:c.	N/A	Intron Variant
CDH13 transcript variant X3	XM_017022849.1:c.	N/A	Intron Variant
CDH13 transcript variant X1	XM_011522804.2:c.	N/A	Genic Upstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.005	A=0.995
1000Genomes	American	Sub	694	G=0.080	A=0.920
1000Genomes	East Asian	Sub	1008	G=0.125	A=0.875
1000Genomes	Europe	Sub	1006	G=0.086	A=0.914
1000Genomes	Global	Study-wide	5008	G=0.084	A=0.916
1000Genomes	South Asian	Sub	978	G=0.150	A=0.850
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.087	A=0.913
The Genome Aggregation Database	African	Sub	8726	G=0.017	A=0.983
The Genome Aggregation Database	American	Sub	836	G=0.050	A=0.950
The Genome Aggregation Database	East Asian	Sub	1618	G=0.127	A=0.873
The Genome Aggregation Database	Europe	Sub	18458	G=0.104	A=0.895
The Genome Aggregation Database	Global	Study-wide	29940	G=0.078	A=0.921
The Genome Aggregation Database	Other	Sub	302	G=0.120	A=0.880
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.058	A=0.941
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.085	A=0.915

PMID	Title	Author	Journal
19268276	Genome-wide association study of smoking initiation and current smoking.	Vink JM	Am J Hum Genet

SNP ID	p-value	Traits	Study
rs11150518	0.000101	nicotine smoking	19268276

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr16	82926062	82926151	E067	-3577
chr16	82926384	82926431	E067	-3297
chr16	82914033	82914108	E070	-15620
chr16	82914150	82914239	E070	-15489
chr16	82915797	82915914	E070	-13814
chr16	82915944	82916044	E070	-13684
chr16	82916065	82916127	E070	-13601
chr16	82958955	82959022	E070	29227
chr16	82959238	82959278	E070	29510
chr16	82959406	82959747	E070	29678
chr16	82971649	82972037	E070	41921
chr16	82972078	82972164	E070	42350
chr16	82972190	82972240	E070	42462
chr16	82972522	82972602	E070	42794
chr16	82975477	82975527	E070	45749
chr16	82976105	82976158	E070	46377
chr16	82976356	82976410	E070	46628
chr16	82976654	82976709	E070	46926
chr16	82976760	82976814	E070	47032
chr16	82977016	82977277	E070	47288
chr16	82957590	82958399	E071	27862
chr16	82957590	82958399	E072	27862
chr16	82958475	82958611	E072	28747
chr16	82958955	82959022	E072	29227
chr16	82917233	82917518	E073	-12210
chr16	82917984	82918054	E073	-11674
chr16	82957590	82958399	E074	27862
chr16	82891609	82891933	E081	-37795
chr16	82907781	82908041	E081	-21687
chr16	82908061	82908247	E081	-21481
chr16	82908254	82908560	E081	-21168
chr16	82908588	82908678	E081	-21050
chr16	82915071	82915121	E081	-14607
chr16	82915134	82915255	E081	-14473
chr16	82915257	82915399	E081	-14329
chr16	82907781	82908041	E082	-21687
chr16	82908061	82908247	E082	-21481
chr16	82908254	82908560	E082	-21168
chr16	82908588	82908678	E082	-21050

rs11150518