rs11200700

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0161 (4847/29950,GnomAD)
G=0164 (4784/29118,TOPMED)
G=0138 (689/5008,1000G)
G=0155 (599/3854,ALSPAC)
G=0163 (605/3708,TWINSUK)
chr10:83854079 (GRCh38.p7) (10q23.1)
AD
GWASdb2
1   publication(s)
See rs on genome
24 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.83854079A>G
GRCh37.p13 chr 10NC_000010.10:g.85613835A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.778G=0.222
1000GenomesAmericanSub694A=0.910G=0.090
1000GenomesEast AsianSub1008A=0.904G=0.096
1000GenomesEuropeSub1006A=0.832G=0.168
1000GenomesGlobalStudy-wide5008A=0.862G=0.138
1000GenomesSouth AsianSub978A=0.930G=0.070
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.845G=0.155
The Genome Aggregation DatabaseAfricanSub8710A=0.785G=0.215
The Genome Aggregation DatabaseAmericanSub838A=0.890G=0.110
The Genome Aggregation DatabaseEast AsianSub1614A=0.889G=0.111
The Genome Aggregation DatabaseEuropeSub18486A=0.856G=0.143
The Genome Aggregation DatabaseGlobalStudy-wide29950A=0.838G=0.161
The Genome Aggregation DatabaseOtherSub302A=0.850G=0.150
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.835G=0.164
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.837G=0.163
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs112007000.0001alcoholismpha002891
rs112007000.0001alcohol dependence20201924

eQTL of rs11200700 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11200700 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr108564657485646626E06832739
chr108564674185646939E06832906
chr108564136685641807E06927531
chr108563560085635703E07021765
chr108563589085636108E07022055
chr108564098685641316E07027151
chr108564136685641807E07027531
chr108564608985646204E07032254
chr108564627185646475E07032436
chr108564657485646626E07032739
chr108564674185646939E07032906
chr108564098685641316E07127151
chr108564136685641807E07127531
chr108563079785630847E07216962
chr108563090585630965E07217070
chr108563097185631058E07217136
chr108558367885583728E081-30107
chr108558377085583828E081-30007
chr108558386085583910E081-29925
chr108558401385584122E081-29713
chr108558417285584252E081-29583
chr108558430285584428E081-29407
chr108564608985646204E08232254
chr108564627185646475E08232436