SNP Detail Info-rs1120211

Organism: Homo sapiens

Alleles: A>C / A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A==0224 (4500/20061,GnomAD)
C=0000 (6/12804,TOPMED)
A==0235 (886/3775,1000G)
A==0062 (231/3708,TWINSUK)
A==0068 (196/2889,ALSPAC)

Position: chrX:149385781 (GRCh38.p7) (Xq28)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1003	A=0.622	G=0.378
1000Genomes	American	Sub	524	A=0.060	G=0.940
1000Genomes	East Asian	Sub	764	A=0.130	G=0.870
1000Genomes	Europe	Sub	766	A=0.060	G=0.940
1000Genomes	Global	Study-wide	3775	A=0.235	G=0.765
1000Genomes	South Asian	Sub	718	A=0.110	G=0.890
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	2889	A=0.068	G=0.932
The Genome Aggregation Database	African	Sub	5589	A=0.555	G=0.445
The Genome Aggregation Database	American	Sub	588	A=0.070	G=0.930
The Genome Aggregation Database	East Asian	Sub	965	A=0.160	G=0.840
The Genome Aggregation Database	Europe	Sub	12738	A=0.093	G=0.906
The Genome Aggregation Database	Global	Study-wide	20061	A=0.224	G=0.775
The Genome Aggregation Database	Other	Sub	181	A=0.050	G=0.950
Trans-Omics for Precision Medicine	Global	Study-wide	12804	A=0.999	C=0.000
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.062	G=0.938

PMID	Title	Author	Journal
17158188	Novel genes identified in a high-density genome wide association study for nicotine dependence.	Bierut LJ	Hum Mol Genet

SNP ID	p-value	Traits	Study
rs1120211	0.000301	nicotine dependence	17158188

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs1120211