rs113791767

Homo sapiens
insT
PRKXP1 : Non Coding Transcript Variant
Check p-value
Insertion
None (
chr15:100553925-100553926 (GRCh38.p7) (15q26.3)
AD
GWASdb2
1   publication(s)
See rs on genome
32 Enhancers around
10 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.100553925_100553926insT
GRCh37.p13 chr 15NC_000015.9:g.101094130_101094131insT

Gene: PRKXP1, protein kinase, X-linked, pseudogene 1(minus strand)

Molecule type Change Amino acid[Codon] SO Term
PRKXP1 transcriptNR_073405.1:n.535...NR_073405.1:n.5358_5359insA>ANon Coding Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs1137917670.00065alcohol dependence20201924

eQTL of rs113791767 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs113791767 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr15101065746101066988E068-27142
chr15101140459101140499E06846329
chr15101140537101140587E06846407
chr15101140873101140917E06846743
chr15101065746101066988E069-27142
chr15101140459101140499E06946329
chr15101140537101140587E06946407
chr15101140873101140917E06946743
chr15101065241101065501E070-28629
chr15101065600101065685E070-28445
chr15101065746101066988E070-27142
chr15101071519101071674E070-22456
chr15101072034101072084E070-22046
chr15101072273101072561E070-21569
chr15101138928101139055E07044798
chr15101139098101139323E07044968
chr15101065746101066988E071-27142
chr15101139098101139323E07144968
chr15101065746101066988E072-27142
chr15101102583101102693E0728453
chr15101140873101140917E07246743
chr15101065746101066988E074-27142
chr15101065241101065501E081-28629
chr15101065600101065685E081-28445
chr15101065746101066988E081-27142
chr15101070215101070505E081-23625
chr15101140873101140917E08146743
chr15101065746101066988E082-27142
chr15101070215101070505E082-23625
chr15101072034101072084E082-22046
chr15101072273101072561E082-21569
chr15101140873101140917E08246743








Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr15101141028101143692E06746898
chr15101141028101143692E06846898
chr15101141028101143692E06946898
chr15101141028101143692E07046898
chr15101141028101143692E07146898
chr15101141028101143692E07246898
chr15101141028101143692E07346898
chr15101141028101143692E07446898
chr15101141028101143692E08146898
chr15101141028101143692E08246898