SNP Detail Info-rs113942939

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0011 (347/29944,GnomAD)
A=0018 (543/29118,TOPMED)
A=0011 (55/5008,1000G)

Position: chr5:158659196 (GRCh38.p7) (5q33.3)

Phenotype: AD

Dataset:

GWASCatalog

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 22 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 5	NC_000005.10:g.158659196G>A
GRCh37.p13 chr 5	NC_000005.9:g.158086204G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.961	A=0.039
1000Genomes	American	Sub	694	G=1.000	A=0.000
1000Genomes	East Asian	Sub	1008	G=1.000	A=0.000
1000Genomes	Europe	Sub	1006	G=1.000	A=0.000
1000Genomes	Global	Study-wide	5008	G=0.989	A=0.011
1000Genomes	South Asian	Sub	978	G=1.000	A=0.000
The Genome Aggregation Database	African	Sub	8724	G=0.960	A=0.040
The Genome Aggregation Database	American	Sub	838	G=1.000	A=0.000
The Genome Aggregation Database	East Asian	Sub	1586	G=1.000	A=0.000
The Genome Aggregation Database	Europe	Sub	18494	G=0.999	A=0.000
The Genome Aggregation Database	Global	Study-wide	29944	G=0.988	A=0.011
The Genome Aggregation Database	Other	Sub	302	G=1.000	A=0.000
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.981	A=0.018

PMID	Title	Author	Journal
29071344	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Zhou H	JAMA Psychiatry

SNP ID	p-value	Traits	Study
rs113942939	3E-06	alcohol dependence	29071344

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr5	158046201	158046412	E067	-39792
chr5	158122253	158122453	E067	36049
chr5	158122485	158123202	E067	36281
chr5	158046201	158046412	E068	-39792
chr5	158046472	158046680	E068	-39524
chr5	158045682	158046033	E069	-40171
chr5	158046201	158046412	E069	-39792
chr5	158046472	158046680	E069	-39524
chr5	158045682	158046033	E070	-40171
chr5	158046201	158046412	E070	-39792
chr5	158067028	158067176	E070	-19028
chr5	158067307	158067449	E070	-18755
chr5	158045682	158046033	E071	-40171
chr5	158046201	158046412	E071	-39792
chr5	158046201	158046412	E072	-39792
chr5	158046472	158046680	E072	-39524
chr5	158045682	158046033	E073	-40171
chr5	158046201	158046412	E073	-39792
chr5	158046472	158046680	E073	-39524
chr5	158046201	158046412	E074	-39792
chr5	158046472	158046680	E074	-39524
chr5	158123940	158124159	E081	37736

rs113942939