rs113942939

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0011 (347/29944,GnomAD)
A=0018 (543/29118,TOPMED)
A=0011 (55/5008,1000G)
chr5:158659196 (GRCh38.p7) (5q33.3)
AD
GWASCatalog
1   publication(s)
See rs on genome
22 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.158659196G>A
GRCh37.p13 chr 5NC_000005.9:g.158086204G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.961A=0.039
1000GenomesAmericanSub694G=1.000A=0.000
1000GenomesEast AsianSub1008G=1.000A=0.000
1000GenomesEuropeSub1006G=1.000A=0.000
1000GenomesGlobalStudy-wide5008G=0.989A=0.011
1000GenomesSouth AsianSub978G=1.000A=0.000
The Genome Aggregation DatabaseAfricanSub8724G=0.960A=0.040
The Genome Aggregation DatabaseAmericanSub838G=1.000A=0.000
The Genome Aggregation DatabaseEast AsianSub1586G=1.000A=0.000
The Genome Aggregation DatabaseEuropeSub18494G=0.999A=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29944G=0.988A=0.011
The Genome Aggregation DatabaseOtherSub302G=1.000A=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.981A=0.018
PMID Title Author Journal
29071344Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.Zhou HJAMA Psychiatry

P-Value

SNP ID p-value Traits Study
rs1139429393E-06alcohol dependence29071344

eQTL of rs113942939 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs113942939 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr5158046201158046412E067-39792
chr5158122253158122453E06736049
chr5158122485158123202E06736281
chr5158046201158046412E068-39792
chr5158046472158046680E068-39524
chr5158045682158046033E069-40171
chr5158046201158046412E069-39792
chr5158046472158046680E069-39524
chr5158045682158046033E070-40171
chr5158046201158046412E070-39792
chr5158067028158067176E070-19028
chr5158067307158067449E070-18755
chr5158045682158046033E071-40171
chr5158046201158046412E071-39792
chr5158046201158046412E072-39792
chr5158046472158046680E072-39524
chr5158045682158046033E073-40171
chr5158046201158046412E073-39792
chr5158046472158046680E073-39524
chr5158046201158046412E074-39792
chr5158046472158046680E074-39524
chr5158123940158124159E08137736