rs115182184

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0016 (481/29778,GnomAD)
A=0023 (689/29118,TOPMED)
A=0017 (83/5008,1000G)

Position: chr2:156342049 (GRCh38.p7) (2q24.1)

Phenotype: AD

Dataset:

GWASCatalog

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 41 Enhancers around

Promoter: 41 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 2	NC_000002.12:g.156342049G>A
GRCh37.p13 chr 2	NC_000002.11:g.157198561G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.940	A=0.060
1000Genomes	American	Sub	694	G=0.990	A=0.010
1000Genomes	East Asian	Sub	1008	G=1.000	A=0.000
1000Genomes	Europe	Sub	1006	G=1.000	A=0.000
1000Genomes	Global	Study-wide	5008	G=0.983	A=0.017
1000Genomes	South Asian	Sub	978	G=1.000	A=0.000
The Genome Aggregation Database	African	Sub	8662	G=0.945	A=0.055
The Genome Aggregation Database	American	Sub	838	G=1.000	A=0.000
The Genome Aggregation Database	East Asian	Sub	1616	G=1.000	A=0.000
The Genome Aggregation Database	Europe	Sub	18360	G=0.999	A=0.000
The Genome Aggregation Database	Global	Study-wide	29778	G=0.983	A=0.016
The Genome Aggregation Database	Other	Sub	302	G=1.000	A=0.000
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.976	A=0.023

PMID	Title	Author	Journal
29071344	Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.	Zhou H	JAMA Psychiatry

SNP ID	p-value	Traits	Study
rs115182184	8E-06	alcohol dependence	29071344

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

There is no significant Hi-C chromatin interaction data for this SNP.

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr2	157195152	157195389	E067	-3172
chr2	157195648	157195793	E067	-2768
chr2	157195809	157195880	E067	-2681
chr2	157195989	157196319	E067	-2242
chr2	157196404	157196495	E067	-2066
chr2	157196961	157197220	E067	-1341
chr2	157195989	157196319	E068	-2242
chr2	157195083	157195141	E069	-3420
chr2	157195152	157195389	E069	-3172
chr2	157195648	157195793	E069	-2768
chr2	157195809	157195880	E069	-2681
chr2	157195989	157196319	E069	-2242
chr2	157196404	157196495	E069	-2066
chr2	157196961	157197220	E069	-1341
chr2	157194643	157194693	E071	-3868
chr2	157194836	157194916	E071	-3645
chr2	157195083	157195141	E071	-3420
chr2	157195152	157195389	E071	-3172
chr2	157195648	157195793	E071	-2768
chr2	157195989	157196319	E071	-2242
chr2	157196404	157196495	E071	-2066
chr2	157196961	157197220	E071	-1341
chr2	157195152	157195389	E072	-3172
chr2	157196404	157196495	E072	-2066
chr2	157196961	157197220	E072	-1341
chr2	157195083	157195141	E073	-3420
chr2	157195152	157195389	E073	-3172
chr2	157195989	157196319	E073	-2242
chr2	157195083	157195141	E074	-3420
chr2	157195152	157195389	E074	-3172
chr2	157195648	157195793	E074	-2768
chr2	157195809	157195880	E074	-2681
chr2	157195989	157196319	E074	-2242
chr2	157196404	157196495	E074	-2066
chr2	157196961	157197220	E074	-1341
chr2	157168468	157168858	E081	-29703
chr2	157168900	157168995	E081	-29566
chr2	157219421	157219511	E081	20860
chr2	157219667	157220376	E081	21106
chr2	157168468	157168858	E082	-29703
chr2	157168900	157168995	E082	-29566

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr2	157176013	157177558	E067	-21003
chr2	157177578	157177691	E067	-20870
chr2	157187808	157192616	E067	-5945
chr2	157197554	157200132	E067	0
chr2	157176013	157177558	E068	-21003
chr2	157177578	157177691	E068	-20870
chr2	157177720	157180726	E068	-17835
chr2	157187808	157192616	E068	-5945
chr2	157197554	157200132	E068	0
chr2	157176013	157177558	E069	-21003
chr2	157177578	157177691	E069	-20870
chr2	157177720	157180726	E069	-17835
chr2	157187808	157192616	E069	-5945
chr2	157197554	157200132	E069	0
chr2	157197554	157200132	E070	0
chr2	157176013	157177558	E071	-21003
chr2	157177578	157177691	E071	-20870
chr2	157177720	157180726	E071	-17835
chr2	157187808	157192616	E071	-5945
chr2	157197554	157200132	E071	0
chr2	157176013	157177558	E072	-21003
chr2	157177578	157177691	E072	-20870
chr2	157177720	157180726	E072	-17835
chr2	157187808	157192616	E072	-5945
chr2	157197554	157200132	E072	0
chr2	157176013	157177558	E073	-21003
chr2	157177578	157177691	E073	-20870
chr2	157177720	157180726	E073	-17835
chr2	157187808	157192616	E073	-5945
chr2	157197554	157200132	E073	0
chr2	157176013	157177558	E074	-21003
chr2	157177578	157177691	E074	-20870
chr2	157187808	157192616	E074	-5945
chr2	157197554	157200132	E074	0
chr2	157187663	157187752	E081	-10809
chr2	157197554	157200132	E081	0
chr2	157176013	157177558	E082	-21003
chr2	157177578	157177691	E082	-20870
chr2	157187663	157187752	E082	-10809
chr2	157187808	157192616	E082	-5945
chr2	157197554	157200132	E082	0