rs115357105

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0014 (441/29998,GnomAD)
G=0021 (636/29118,TOPMED)
G=0013 (63/5008,1000G)
chr9:104376689 (GRCh38.p7) (9q31.1)
AD
GWASCatalog
1   publication(s)
See rs on genome
25 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.104376689A>G
GRCh37.p13 chr 9NC_000009.11:g.107138970A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.953G=0.047
1000GenomesAmericanSub694A=1.000G=0.000
1000GenomesEast AsianSub1008A=1.000G=0.000
1000GenomesEuropeSub1006A=1.000G=0.000
1000GenomesGlobalStudy-wide5008A=0.987G=0.013
1000GenomesSouth AsianSub978A=1.000G=0.000
The Genome Aggregation DatabaseAfricanSub8728A=0.950G=0.050
The Genome Aggregation DatabaseAmericanSub838A=1.000G=0.000
The Genome Aggregation DatabaseEast AsianSub1622A=1.000G=0.000
The Genome Aggregation DatabaseEuropeSub18508A=1.000G=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29998A=0.985G=0.014
The Genome Aggregation DatabaseOtherSub302A=1.000G=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.978G=0.021
PMID Title Author Journal
29071344Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.Zhou HJAMA Psychiatry

P-Value

SNP ID p-value Traits Study
rs1153571059E-07alcohol dependence29071344

eQTL of rs115357105 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs115357105 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr9107094376107094443E070-44527
chr9107094720107094872E070-44098
chr9107095206107095256E070-43714
chr9107129612107129703E070-9267
chr9107129847107130122E070-8848
chr9107147953107148009E0708983
chr9107148339107148691E0709369
chr9107090368107090457E081-48513
chr9107090472107090522E081-48448
chr9107090594107090815E081-48155
chr9107091103107091153E081-47817
chr9107105714107105829E081-33141
chr9107105862107105952E081-33018
chr9107105960107106045E081-32925
chr9107106075107106138E081-32832
chr9107106192107106274E081-32696
chr9107106371107106832E081-32138
chr9107106966107107131E081-31839
chr9107107250107107300E081-31670
chr9107147612107147870E0818642
chr9107147953107148009E0818983
chr9107148091107148163E0819121
chr9107147953107148009E0828983
chr9107148091107148163E0829121
chr9107148339107148691E0829369